Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1674 ATGGGCATAATCAGAAGCATGAGATCGAGGTCGCATCGCGTGGTGCAGGAGCAAGAAGAGTGTGTTGGTGACAGCATGAGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTTCTCCTGCGAATCGAGGCCTCCGAGGACATGTGGCCGCCGCGGAAGAGTGTTGTCGCCTGCGCCGGCGTGTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAACTTTCCTCAAAAATCACCTTCCCCATTTCTGTTAAACAGCCTGGTCCAAGGGAGAATCTCCTCCGGTGCTTTATAAAGCGCAACCGGTCCACCCAAACGTACTATTTGTTTCTCAGTTTAGCCAATACTCTAGCTGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCAACATGCACAGATTATATAATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCACCTCATTCAGGTGCAAGGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAACAAGTTTCACCTAAGGTCCCTACAGGCAACTATCCAGTGGCCCACATCTCATATGAATTGAATGTGCTAGGCTCCCGGGGGCCTAGGAGAATGCACTGTGTCATGGATTCTATTCCTGCCACTGCAATTGAAGCTGGAGGAGTAGCTCCTACACAAACTGAGTTTTCTCTTAACAACATAGATATGTTTCCTTCATTCCCTTTCTTCCGATCAAAATCAAATCGTGTAGAAAACTCCATGTCTGGACCCCTGGTTGATCAAAGGGATGGGATGCTCGTGTTGAAAAACAAGGCTCCTAGGTGGCATGAGCAACTCCAGTGTTGGTGCTTAAACTTTCATGGCCGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCTGCTGGACCAGAGCATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCTATTTCAGCATTTCAGGCCTTTGCCATGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1152 0.4722 MGIIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDMWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLANTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEAGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENSMSGPLVDQRDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAMCLSSFDTKIACE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1674 383 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Pvu6g1674 383 Pfam Tub family 92 378 IPR000007 -
Pvu6g1674 383 SUPERFAMILY Tubby C-terminal domain-like 80 383 IPR025659 -
Pvu6g1674 383 Gene3D Tubby Protein; Chain A 91 377 IPR025659 -
Pvu6g1674 383 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Pvu6g1674 383 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Pvu6g1674 383 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Pvu6g1674 383 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Pvu6g1674 383 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Pvu6g1674 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Pvu6g1674 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Pvu6g1674 383 Gene3D - 24 84 - -
Pvu6g1674 383 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 3 383 - -
Pvu6g1674 383 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Pvu6g1674 383 PANTHER TUBBY-RELATED 3 383 - -
Pvu6g1674 383 Pfam F-box domain 31 78 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1674 Pvu-Chr6 27287280 27292535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1674 8 383 TUB Transcription Factor Family AT2G47900 72.296 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu6g1674 Tub 1.3e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1674 K19600 - gmx:100778346 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1674 6 27287280 27292535 Pvu6g1674 6 27287280 27292535 ECH
Pvu3g1048 3 24607072 24610703 Pvu6g1674 6 27287280 27292535 PCT