Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1664 ATGCAAGCTCCTCAACCATCACTCACTGATGAAGCTCCCGAGATTTCCCATCAGGCTGTCCCACTGCGAAACAAAGAAGTTTCAGATAGTGGACCCGGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCTCCTAGACCTATAGGGTTTGGGAGCACTAGTGGTGTGAGGGCTCTGGATCATTCTCAAAGTTTCACTAAAGGGATATCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGTGGATGGAGAAAGAAGCAGCCTACTTAGTTCAGACCCCAAGACAGCTGCAGACAGTTCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGCACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTCGCTACACCCATTTCTGCAAGGACATATACTGAACAAATTAAGCCACATAAAGAGGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATCTTGTTATTGTAAGATCTGTCTCTTTTTCTACTCGTAGTGAACAGGAGCAACAAGATCCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGTTACTTCCGATGAGGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGACTGGTACATGAAGAATGTTTAATTAAATGGTTTAGCACAAAAAGAGACAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACAAGCTCGATTCAACGACAAAACAGACAGACGCAAGGTCAGCAGAGCCTACATCCAGAGTCAATAAGCGCATGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCTATTATTATTTCGGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATCCTGGCAATTAAGGAGTATATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTGGCTTTAACTGTGCATCTATTTTATACAGTGTTGCATCTGATGGCCATATATGCCATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGACCATCAACTACGCATATATCCAGTTTGTCACTTGGAGGCTTCAAGTCTCTCATGATGATCACCCAGTATGA 1269 0.4263 MQAPQPSLTDEAPEISHQAVPLRNKEVSDSGPGGRRPDISLQVPPRPIGFGSTSGVRALDHSQSFTKGISSSRGFLRALSFKRKGNVVDGERSSLLSSDPKTAADSSNMASISEIAWKRCTSLPVTPASNLSPSVATPISARTYTEQIKPHKEVDRSKVSRSLSVPGRNLVIVRSVSFSTRSEQEQQDPNDDQITPVPVEVTSDEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSTKRDKKCDVCRQEVQNLPVTLLRVTSSIQRQNRQTQGQQSLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIISAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTVLHLMAIYAILLSSVLGFGIAMTINYAYIQFVTWRLQVSHDDHPV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1664 422 PANTHER ZINC FINGER PROTEIN 2 422 - -
Pvu6g1664 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Pvu6g1664 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Pvu6g1664 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Pvu6g1664 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Pvu6g1664 422 PANTHER OS02G0165000 PROTEIN 2 422 - -
Pvu6g1664 422 SUPERFAMILY RING/U-box 210 264 - -
Pvu6g1664 422 MobiDBLite consensus disorder prediction 1 55 - -
Pvu6g1664 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
Pvu6g1664 422 ProSiteProfiles Zinc finger RING-type profile. 214 261 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1664 Pvu-Chr6 27212746 27217051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1664 152 321 C3H Transcription Factor Family AT2G37950 25.543 6.96e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1664 - - vun:114188987 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1664 6 27212746 27217051 Pvu6g1664 6 27212746 27217051 ECH