Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1660 ATGGAACCCCAACAATCGCTTCCTCCCATGGACGATTCTGAAGACCCTTCCTCCATTTGGGACTTCTCCTACCTCCTTGATTTCAACATCGACGAAGACCACACCAATAACTCTCTCCCTATCTCTTCTCCCTTCAACGACGCTCCCGAGATCCCTAACGACCGGGTCCGAAAGCGTGACCCCCGACTCACCTGCTCCAACTTTCTCGCGGGTCACGTCCCCTGCGCCTGCCCCGAACTCGACGCCAAGCTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCGCGCACCGCGCGTGCATCCTCATCCGCCCGATGCCAGGTCCCTGGCTGCGAGGTCGATATCTCCGAACTCAAAGGCTATCACCGCCGACATAGAGTCTGCCTCCGCTGCGCCAATGCCACCACCGTCATCCTCCACGGCGAGTCCAAGAGATACTGCCAGCAGTGCGGGAAGTTTCATGTTTTGTCGGATTTCGACGAAGGGAAACGAAGTTGCAGAAGGAAGTTGGAGCGGCATAACACGCGAAGGCGGAGAAAGCCCCTGGTGGACTCCGGATGTGCTTCTGTCGTCGAACTTGAAGCTGTTACACAGAATGAGGAAAGCAATTATGATCCGGAAGCAGGAAAAGATTGTTCAAATTTGAGTAATGAGATCAACGCCGTAGTAGTGTTGCCCGATCATGAAGATGAGCCTGTTCCGATTCTGAGATCAGCTCCTGATGCCCAGAATGTTAATAGTGATAGTGTTGTGTCTTTTCCTGTTTCGGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGTCTACACGTCTATGTGCCAAACAGGTCGTATTTCGTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGCATGCCTGTAGAGTTGGAGGGTTATATCCGCCCTGGGTGCACGATTTTGACCAGTTTTATTGCAATGCCTGACATTATGTGGATAAATTTACGGAAAGACTCTTTGGAATATGTGAACAAACTTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGGAATGCACTAGTTCATCTAAATGGCACAATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAAAGTCGAGGTAAACTTGCAGGCACCTAGACTTCATTATGTTCATCCTACATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAATTTCGGCTGCTTGTATCATTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTACCGTCTCCACATAACTGGACCGAAGAAAATATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATGCGGTTTATCAAACTTTATTCCTGTACTCATTGCGGATAAAGAAATTTGTTCTGAAATGAAGACACTGCAGCAAAAATTAGATTCATCTCTCCTTTCTAAACAATTCCGGTCTGCATCTGGTGGTTCTATCTGCAGCTCGTGTGAAACATTTACACTTAGTCACACATCGTCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATCCAAAGATATTGTCATTTGTTGGATTTTCTGATGTGCAATGAATCAACAGTCATGTTGAAAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATTTTTTGATTAATAGGACGAGTTATGTTGATACAAGGCAACTCCTGAATCACATACATGATGCTCAAATTGCCATATATCAGAAACATCAGAAAAATGGAAGTATAATTACGCTGCCTGAAATGGAAAGCCTTAAACTTGAACAAGGCTGCTCCCAAGATAGCAAGATCGCAACTAACAGTCAGGGAATCCTGTCAAGAGCAGATGCAAAGTGGGGAGTACTGAAAAATTTAACTTCTAATGGCAGAAAAGAAAGAATACCTCTCTTGAAGAGAGAGATTATAATGAATGTGGAAGAGTTGCCTGAAAGATATGGTCGTGGATGTTTAGGCAGAGGGTTCTTAACACCTCGACCAGCTATTTTTGTGATTGTTTCAATTGCTGTTTGTCTTGGAGTTTGTGTAGCCGTCCTTCATCCAGGAAGGGTTACTGAGTTAGCAGTATCCGTTAGAAGGTGTTTATTTAACTATTAG 2289 0.4417 MEPQQSLPPMDDSEDPSSIWDFSYLLDFNIDEDHTNNSLPISSPFNDAPEIPNDRVRKRDPRLTCSNFLAGHVPCACPELDAKLEDEGLPGKKRARTARASSSARCQVPGCEVDISELKGYHRRHRVCLRCANATTVILHGESKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVDSGCASVVELEAVTQNEESNYDPEAGKDCSNLSNEINAVVVLPDHEDEPVPILRSAPDAQNVNSDSVVSFPVSGETRVNSGNTSNSPSYCDNKSVYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPDIMWINLRKDSLEYVNKLVAPGKMLSGRGNALVHLNGTIFRVMKDGTSVTKVEVNLQAPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHNWTEENISCAFDNQLYKIYVPHTEESLFGPAFIEVENECGLSNFIPVLIADKEICSEMKTLQQKLDSSLLSKQFRSASGGSICSSCETFTLSHTSSDLLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLMCNESTVMLKKILPNLIILTESMKSNFLINRTSYVDTRQLLNHIHDAQIAIYQKHQKNGSIITLPEMESLKLEQGCSQDSKIATNSQGILSRADAKWGVLKNLTSNGRKERIPLLKREIIMNVEELPERYGRGCLGRGFLTPRPAIFVIVSIAVCLGVCVAVLHPGRVTELAVSVRRCLFNY* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1660 762 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Pvu6g1660 762 Gene3D - 97 167 IPR036893 GO:0003677|GO:0005634
Pvu6g1660 762 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
Pvu6g1660 762 Pfam SBP domain 106 180 IPR004333 GO:0003677
Pvu6g1660 762 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 760 IPR044817 GO:0003677
Pvu6g1660 762 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 14 760 - -
Pvu6g1660 762 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1660 Pvu-Chr6 27164200 27178889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1660 8 756 SBP-box Gene Family AT5G18830 46.692 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu6g1660 SBP 2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1660 6 27164200 27178889 Pvu6g1660 6 27164200 27178889 ECH