Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1653 ATGAACGATGAACGAGAACCAACAGCTTCCCCGAGCAATGGCGTCCACAAGATAGAAAAAAAACAAATAGTTGAAAAGGAGAAATCTCTTTTTAAAGGGAGACGTCCACGACCTGGGTTTTCTGATTCATTCTCAAGTATAGAATTGGAAACTTTAGACATTGAAGTGGGAGCCCCACCTGAGCACTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAAGGACCAGCACTTCTGATTCGGAGAGTCAGGGGTCTTTAGTAGGAAATTCACCTAATTCTAATAACCAATGGCGTGGTTTCTTTAAGTTACTGAAGAAAGGATCCCAAATGCCTTTCCAAACTTTTCATCCACTTAAAAATGTTCCTAAACTGACAAGAAGAAAAAGCAAGAGAATCAGGGAGGACCTGATTCCATCTTTGAATTCTCCAGCTCTTCAGTCATCATTTGACACTGAGTTTGGCTGCTTCAAATCTTCCTGGAAAAACTTCACTCTCGCAGAGATCTTGACCGCAACAGACGAATTTAGCCAAGTTAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTATTTAGGCAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTCTTGTCCGAGCTTGGCATTATAGTACATGTGGATCACCCCAATATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCTATACTTTATGGACCTAGAGAGAAACTAAATTGGAGACTCAGATATAAGATTATTTTGGGGACTGCTGAGGGCCTCCGCTATCTGCATGAAGAATGTCAAAGAAGGATCATTCACAAAGACATTAAGGCTTCTAATATTTTGCTCTCAGAGGATTTTGAGCCCCAGATATCCGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACAGATGTCTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAGAAGCCTGGTGATGTGGGCAAAACCTCTGCTATCTGCAAACAACATCAAAGCCCTAGTCGATCCAGTTTTGGTTGATGCTTACGATGAAGAGCAGATGAAACTTGTAACCTTAACAGCTTCTCTATGTGTTGACCAGTCTTCGATTCAGCGACCAGATATGAGCCAGGTGTTGGAGATCCTAAGAGGGGAAGAAGAAATCCTAAGCATCTTGAAAGAACGGTCCAAGGTAAAACTTCAGAGGACATACTCTGAAGAACTCTTAGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAGTGAGAGGGATCGACATATGGAGACTATTCTAGGATCAGTTACAGACGAAGATAAATAG 1497 0.4208 MNDEREPTASPSNGVHKIEKKQIVEKEKSLFKGRRPRPGFSDSFSSIELETLDIEVGAPPEHSPRSQGSETPSSRTSTSDSESQGSLVGNSPNSNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDTEFGCFKSSWKNFTLAEILTATDEFSQVNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWRLRYKIILGTAEGLRYLHEECQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQRSLVMWAKPLLSANNIKALVDPVLVDAYDEEQMKLVTLTASLCVDQSSIQRPDMSQVLEILRGEEEILSILKERSKVKLQRTYSEELLDAEEYNSTKFLSERDRHMETILGSVTDEDK* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1653 498 Pfam Protein tyrosine and serine/threonine kinase 180 440 IPR001245 GO:0004672|GO:0006468
Pvu6g1653 498 SUPERFAMILY Protein kinase-like (PK-like) 158 441 IPR011009 -
Pvu6g1653 498 MobiDBLite consensus disorder prediction 1 95 - -
Pvu6g1653 498 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Pvu6g1653 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Pvu6g1653 498 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 34 479 - -
Pvu6g1653 498 SMART serkin_6 176 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1653 498 ProSiteProfiles Protein kinase domain profile. 176 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1653 498 Gene3D Transferase(Phosphotransferase) domain 1 253 463 - -
Pvu6g1653 498 MobiDBLite consensus disorder prediction 64 95 - -
Pvu6g1653 498 Gene3D Phosphorylase Kinase; domain 1 140 250 - -
Pvu6g1653 498 MobiDBLite consensus disorder prediction 18 35 - -
Pvu6g1653 498 PANTHER OS08G0249100 PROTEIN 34 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1653 Pvu-Chr6 27119062 27122812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1653 147 447 Receptor kinase-like Gene Family AT1G53420 39.159 1.34e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pvu6g1653 PK_Tyr_Ser-Thr 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1653 - - gmx:102670300 835.869