Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1635 ATGATTGTAAAGGAGCATTTTGTTGGTACTGAGCTGGCAATGAATAATGCTATTGTGGAGGAGGAAATAGATTTTTCTTGTGATCCGTACATAGGGTTAGAATTTGACACAGCAGATGAAGCACTACAGTTTTACACTTCATATGCAAATCGAGCAGGATTTAAAGTTCGGATTGGTCAGCTGTATCGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCAAAGGAGGGACATCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTGCAAATAAATGGTTCTGGAAAGTGGGTGATTGATCATTTTCACAAGGACCATAATCACAATCTTGAAATCAGTGGTGAAAACTGTACTCCAACATTGCAACAGAAGGGTGGTACAGTTGTCAGCTCTCTTACTGAGTTTACTCGTAGGCCGAGGAAGAAATTGCTCGAAGAAGTCAATAATGAATCCTCTTGTCCCTTTGGCATTATTGATTTCAAGCGTCTCAGAAAGGAAGAACTTGAAGGACAGCCCAAGACTGAGCCATATGTGGGTCAAGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCACGTATGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAAAATGATGGATTGATTACATCTCGGCGATTTGTTTGCTCTAAAGAGGGGTTCCAGCATCCTTCAAGAGTTGGCTGTGGGGCTTATTTAAGGATTAAGAGACAGCCATCGGGAAAGTGGACAGTGGACCGCCTCCGAAAAGATCATAACCATGATCTGGACTCTGAAAAAGAGGGTAGGGCAAAAGGTCTTCATGCTTCTAATATTCTGAATGACGATGCAGATAATGGATTCGTAAATGGTGACTTGTTTAGAATCGACAACTACCCTGTCCCCAGAGGAGGTAGGCAAAATCACATCAGAAATGAGTGGTACAGCATTCTTTTAGAGTATTTTCAAGCAAGACAAACGGAAGATACTGGATTCTTTTATGCTGTGGAAGTTGACAATGGTAATTGTATGAGCATATTTTGGGCGGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGACGTCCTAGTCTTAGACACATCATACCGAAAAACTGTCTATTTGGTACCTTTTGCTACTTTTGTTGGGGTTAATCATCACAAGCAACCTGTGCTTCTTGGATGTGCTTTAGTTGCCGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCAGCCTCTGACAGTTATTGCTGATCAAGATATTGCAGTCCAAAAGGCAATAGCAAAAGTCTTTCCTGTAACCTATCATCGCTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTGATGGCTTTACAAAGGACTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAACGTGCTACTCAACAAATATGGATTGAAAGACAATGCTTGGCTAAAAGAAATGTATGAGAAGCGAGCATCTTGGGTTCCATTGTATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAAAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCATGGAGTTCATTCCTCGGTACGAAAGGGGTCTTGAGCGACGCCGTGAGGAAGAAAGAAAAGAGGATTTTAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAAGCAGTGGAAGAACAATGCAGAAGGCTTTACACTCTTGCTGTATTCAAAGTATTTCAAAAAGAGCTATTGCAGTGCTTTAGCTATCTTGGGTTTAAAATATTTGAGGAAGGGGGCCTGAGCAGATATATGGTGCGTAGGTGTGGAAATGATATGGAGAAACATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAGTATGATGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTCCAGATATTACAATTAAGAGAAGTTCCTTCTCGCTACATCTTGCACAGGTGGACAAGAAATGCCGAGGATGGTGTCTTTCCTGACATAGACTCGTGGAGTAGCTCTCAGGAACTTAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCTGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2283 0.4109 MIVKEHFVGTELAMNNAIVEEEIDFSCDPYIGLEFDTADEALQFYTSYANRAGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNLEISGENCTPTLQQKGGTVVSSLTEFTRRPRKKLLEEVNNESSCPFGIIDFKRLRKEELEGQPKTEPYVGQEFSSPNEAYQFYHAYAARMGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWTVDRLRKDHNHDLDSEKEGRAKGLHASNILNDDADNGFVNGDLFRIDNYPVPRGGRQNHIRNEWYSILLEYFQARQTEDTGFFYAVEVDNGNCMSIFWADGRSRYSCSQFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALVADESEESFTWLFQTWLRAMSGRQPLTVIADQDIAVQKAIAKVFPVTYHRFSLWQIKAKEQENMGLMGDGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDNAWLKEMYEKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEAVEEQCRRLYTLAVFKVFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFEYDGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDIDSWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1635 760 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
Pvu6g1635 760 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Pvu6g1635 760 Pfam SWIM zinc finger 653 679 IPR007527 GO:0008270
Pvu6g1635 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 145 756 IPR031052 GO:0006355
Pvu6g1635 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 122 IPR031052 GO:0006355
Pvu6g1635 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 145 756 - -
Pvu6g1635 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 25 122 - -
Pvu6g1635 760 SMART 26again6 657 684 IPR006564 GO:0008270
Pvu6g1635 760 Pfam MULE transposase domain 371 464 IPR018289 -
Pvu6g1635 760 ProSiteProfiles Zinc finger SWIM-type profile. 646 682 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1635 Pvu-Chr6 27018404 27021725 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu6g1635 MULE 2.1e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1635 - - gmx:100816656 1441.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1635 6 27018404 27021725 Pvu6g1635 6 27018404 27021725 ECH