Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1634 ATGGTGATCTTGCCTCCTGTGAAACCCTTCCAAGAGGATCAAACCACTCCCTCTCAAACTCAGTGCCCCATTTGCATCCAACAATTCACCAATGGTGATTTAATTCAACCTTTTGGACTCTGTTTTCATGAATTTCACCCCTCTTGCATTCATTCTTGGTTACTTCATGGAAAAATCAGTTGCCCAGTTTGTCGCATGGAGTTGCCGATTACTCTCCCCCGCTGA 225 0.4489 MVILPPVKPFQEDQTTPSQTQCPICIQQFTNGDLIQPFGLCFHEFHPSCIHSWLLHGKISCPVCRMELPITLPR* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1634 74 ProSiteProfiles Zinc finger RING-type profile. 22 65 IPR001841 -
Pvu6g1634 74 Pfam Ring finger domain 21 65 IPR001841 -
Pvu6g1634 74 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 68 - -
Pvu6g1634 74 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 70 IPR013083 -
Pvu6g1634 74 PANTHER OS06G0666500 PROTEIN 1 68 - -
Pvu6g1634 74 SUPERFAMILY RING/U-box 15 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1634 Pvu-Chr6 27015215 27017257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1634 13 65 C3H Transcription Factor Family AT4G38140 39.623 8.21e-10 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1634 - K19040 pvu:PHAVU_006G208700g 97.0561