Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1633 ATGAGAGCCTTGCCTCCAATTCTATGCTTTCAAGGGGATCAAGCTACTCAAACTCAATGTTCTATCTGCATTGAAGAGTTTAAGAATGGTGAGTTAGTTCAACCTTTTGCAGTGTGTCTTCATCAATTTCATTTGGATTGCATCAACTCTTGGCTATTTGTTGGAAAAACTAATTGTCCAGTTTGTCGCCAGCACTTATCAATTGCTACTCAAACTACACACTGA 225 0.3867 MRALPPILCFQGDQATQTQCSICIEEFKNGELVQPFAVCLHQFHLDCINSWLFVGKTNCPVCRQHLSIATQTTH* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1633 74 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 72 IPR013083 -
Pvu6g1633 74 SUPERFAMILY RING/U-box 4 70 - -
Pvu6g1633 74 SMART ring_2 20 62 IPR001841 -
Pvu6g1633 74 PANTHER OS06G0666500 PROTEIN 1 67 - -
Pvu6g1633 74 ProSiteProfiles Zinc finger RING-type profile. 20 63 IPR001841 -
Pvu6g1633 74 Pfam Ring finger domain 19 63 IPR001841 -
Pvu6g1633 74 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1633 Pvu-Chr6 27011030 27012820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1633 12 67 C3H Transcription Factor Family AT2G17450 37.500 1.70e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1633 - K15692 pvu:PHAVU_006G157100g 164.081