Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1617 ATGGCTTCGGCTGCTATCAGAAACCTTCATTCTAAGCGTCTTCTTTTCTCTTTGCATTTCACAAATGCTTTCCATGCATTCTCTTGTGGCACCGTATCCCAAAACTACAATGCATCTCCATTGGATCTTGTTTCTTTACGGAGATCCATGGCCACCTTCTCTCGAACAAAGCCCCATCTTAACGTGGGCACAATAGGGCATGTTGATCATGGGAAAACTACACTAACTGCTGCAATTACCAAGGTGCTAGCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAAATAGACAAGGCTCCCGAGGAGAAGAAGAGAGGAATTACTATTGCTACTGCTCATGTAGAGTATGAGACAGAAAAGAGGCACTATGCTCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGAGCTGCACAAATGGATGGTGGAATTCTTGTGGTTTCTGCTCCAGATGGGCCAATGCCTCAAACAAAGGAACATATACTGCTTGCTCGGCAGGTTGGTGTGCCATCTTTGGTCTGCTTTCTAAATAAGGTTGATGCTGTTGATGATCCAGAGTTGATTGAACTTGTGGAAATGGAGCTTCGTGAACTGCTTAATTTCTACAAATTTCCTGGGGATGACATCCCAATTGTGCGAGGTTCTGCCCTCTCTGCTTTACAGGGGACTAATGAAGAACTTGGAAAAAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATACATTTCTAATCCTGTTCGGCAACTTGACAAGCCTTTCCTAATGCCAATAGAAGACGTTTTCTCAATTCAGGGGCGTGGAACTGTTGTGACGGGTCGTGTTGAACAAGGCACCATCAAAGTGGGAGAGGAGGTTGAAGTATTGGGACTAACACAGAGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGTGGTCTGAAGCGCGATGATGTTCAGCGAGGAATGGTCGTAACCAAGCCTGGTGCTTTCAAAACGTATAAGAAGTTTGAAGCAGAGATTTATGTGCTATCCAAAGAAGAAGGTGGCCGTCATACAGCTTTTTTCTCTAACTATAAGCCTCAGTTTTACCTGAGGACTGCAGATATTACTGGAAAGGTGGAATTACCCGAAAGTGTTAAGATGGTTATGCCTGGTGACAATGTGGCTGCAACTTTCGAGCTGATATCACCTGTTCCTCTTGAAATAGGTAGGTAG 1275 0.4408 MASAAIRNLHSKRLLFSLHFTNAFHAFSCGTVSQNYNASPLDLVSLRRSMATFSRTKPHLNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELIELVEMELRELLNFYKFPGDDIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISNPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGAFKTYKKFEAEIYVLSKEEGGRHTAFFSNYKPQFYLRTADITGKVELPESVKMVMPGDNVAATFELISPVPLEIGR* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1617 424 TIGRFAM small_GTP: small GTP-binding protein domain 61 196 IPR005225 GO:0005525
Pvu6g1617 424 Pfam Elongation factor Tu domain 2 274 345 IPR004161 GO:0005525
Pvu6g1617 424 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 354 423 IPR009001 -
Pvu6g1617 424 Pfam Elongation factor Tu C-terminal domain 351 422 IPR004160 -
Pvu6g1617 424 PANTHER ELONGATION FACTOR TU 41 423 - -
Pvu6g1617 424 Gene3D - 49 252 IPR027417 -
Pvu6g1617 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 275 IPR027417 -
Pvu6g1617 424 SUPERFAMILY Translation proteins 254 349 IPR009000 -
Pvu6g1617 424 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 98 113 IPR031157 -
Pvu6g1617 424 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 57 253 IPR000795 GO:0003924|GO:0005525
Pvu6g1617 424 Hamap Elongation factor Tu [tuf]. 48 424 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pvu6g1617 424 Gene3D Translation factors 255 385 - -
Pvu6g1617 424 PRINTS GTP-binding elongation factor signature 61 74 IPR000795 GO:0003924|GO:0005525
Pvu6g1617 424 PRINTS GTP-binding elongation factor signature 105 113 IPR000795 GO:0003924|GO:0005525
Pvu6g1617 424 PRINTS GTP-binding elongation factor signature 125 135 IPR000795 GO:0003924|GO:0005525
Pvu6g1617 424 PRINTS GTP-binding elongation factor signature 141 152 IPR000795 GO:0003924|GO:0005525
Pvu6g1617 424 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Pvu6g1617 424 CDD EFTU_III 351 423 - -
Pvu6g1617 424 CDD EF_Tu 58 252 IPR041709 -
Pvu6g1617 424 Pfam Elongation factor Tu GTP binding domain 57 250 IPR000795 GO:0003924|GO:0005525
Pvu6g1617 424 TIGRFAM EF-Tu: translation elongation factor Tu 49 423 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pvu6g1617 424 CDD EFTU_II 260 348 IPR033720 -
Pvu6g1617 424 Gene3D Translation factors 389 424 - -
Pvu6g1617 424 PANTHER ELONGATION FACTOR TU-RELATED 41 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1617 Pvu-Chr6 26843495 26846857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1617 55 364 Eukaryotic Initiation Factors Gene Family AT5G60390 33.333 1.96e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1617 K02358 - gmx:102667962 784.637