Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1603 ATGAAGATCTCAATATCAGCCTGTGCCTGCAAGCAAGAGCTGCCCCTAGTAAGTTTCCAAAAGGGACTAATGATGGAGTCGTTGTTTCCTCATCGGAGTAAGGACAAGGTGGTCGTGATAATGGGGGCCACGGGTACCGGCAAGACGAAGTTGGCCATAGACCTGGCAAAACACTTCATACCAGCGGAGATAGTAAACTCCGACAAAATGCAAGTGTACAAGGGCCTCGACATCACCACGAACAAGGTCACCGAAGAAGAGTGTGATGGGGTCCCACATCACCTGCTTGGCACTGTTGACCCTAATATAAATTTCAGTGCCAGCGACTTCTGTCGCCACGCGACTTCCGCAATCGATTCCATTGTGGAAAGGAATGGCTTACCCATCATTGCTGGAGGCTCCAATTCTTACTTGGACGCGCTCGTGAATCACCACGCGGAGTTTAGGTTAAGGTACCAGTGCTGTTTCCTCTGGGTTGACGTGTCTCTCCCCGTGCTCCATTCCTCTCTTCAGGCACGTGTGGACCGCATGATCGACGCCGGTCAAGTCAACGAGGTTCGCGACTTCTTCGATCCTCGCGCCGATTACACCAGAGGGATCCGAAGGGCCATTGGGGTGCCCGAATTCGACGACTTCCTACGCGCTGAAGCTTCTGGAACCGAGGACGAGACAACCACAAAGAGGCTTCTGGAGGCTGCCATTGCCAGGATCAAGATCAACAACTGCACGCTCGCCAGCCGTCAGATTCAAAAAATTCACCGCCTCCACGGGTTGTGGAAACGGAGCATGCATCGCCTCGACGCCACTGAGGTTTTTCTCCGCTCCCACGACGTCTGGCACGACCACGTTCTCGCTAAGAGCTTGCTCATCCTCCACAATTTCCTTTACGGGGAAAAGAAAACGCACGTCCCCGCCGGAATCGTGTCCCCGAAAGACGTAATTGCGGCTGTTTCTTCGCCGTCGGTAGCAATGGCAGCAACCCATTAG 987 0.537 MKISISACACKQELPLVSFQKGLMMESLFPHRSKDKVVVIMGATGTGKTKLAIDLAKHFIPAEIVNSDKMQVYKGLDITTNKVTEEECDGVPHHLLGTVDPNINFSASDFCRHATSAIDSIVERNGLPIIAGGSNSYLDALVNHHAEFRLRYQCCFLWVDVSLPVLHSSLQARVDRMIDAGQVNEVRDFFDPRADYTRGIRRAIGVPEFDDFLRAEASGTEDETTTKRLLEAAIARIKINNCTLASRQIQKIHRLHGLWKRSMHRLDATEVFLRSHDVWHDHVLAKSLLILHNFLYGEKKTHVPAGIVSPKDVIAAVSSPSVAMAATH* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1603 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 27 302 IPR039657 -
Pvu6g1603 328 Pfam IPP transferase 71 145 - -
Pvu6g1603 328 Pfam IPP transferase 149 250 - -
Pvu6g1603 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 209 IPR027417 -
Pvu6g1603 328 Gene3D - 34 295 IPR027417 -
Pvu6g1603 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
Pvu6g1603 328 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 27 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1603 Pvu-Chr6 26718306 26720084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1603 151 301 C2H2 Transcription Factor Family AT2G27760 33.898 7.55e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1603 K10760 - gmx:100812928 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1603 6 26718306 26720084 Pvu6g1603 6 26718306 26720084 ECH
Pvu3g0969 3 19179812 19181667 Pvu6g1603 6 26718306 26720084 PCT