Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1597 ATGGAGTGGCAGAAGAAGAAACAATTACATCCAAAATCCACCTCCTCCACTCCCACCTCCCCCTTACTATTACCCTCCCCAATCCCACCACCTCCCCCTCCGCCGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTACGCCCCACACAGCAACAACTATGCCGCTCCGCCTCCCTTGGCTCCACCACCACAGCCGCCACCGCCGCAGACCCATTCCATTTCCTTCTATTACCCCAACCAGAGTGCCTATCCCAACTACGCCAACTCCGCGCCCAATCGCCTTCACTACCAACCTTTCTACCACCCTCAACCTAGCGTGTGGCCCGCGGCCACTGGCGCCTCTGAATCCACTCCTCCGCCCTATGTCGATCACCAGGCCGCGAAGAAGATAAGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTTCTACTTTGCCAAAGAAGAAGAAAAATGTAGATTTGTTCCATTATTTCCCGATGCATTTCAGCCAGTCAAAATACCCTTTCAGAAAGGAGTTGGCCAGACATTTTCCCAGCCTCCTGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGAAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACAAGTTTGAAAACACCCTCAGAAGATGAAACTCCGGGTGATTCTGTGCTAGATGCATCACCTCACATGCAAATAACGCAAGGTGTCTTAGAGAAAAGTAATGGTGCTGGTCCTTTCCTGATAAAAGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTCGATATGAGTTGAGAGAGTTATTTGGAATAGCAAGCTCATCCGCAGCTGATTTTGACGACAATGATCCCGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCGAATGCTCTGCGAATTCAATCCAATAAATGCCCTATATGCCGTCAGCCTATTGAGGAATTCATTGAGATCAAAGTAAACAGTGGCAATCAATGA 1131 0.4863 MEWQKKKQLHPKSTSSTPTSPLLLPSPIPPPPPPPPPQGYFLPSTTTYAPHSNNYAAPPPLAPPPQPPPPQTHSISFYYPNQSAYPNYANSAPNRLHYQPFYHPQPSVWPAATGASESTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVFYFAKEEEKCRFVPLFPDAFQPVKIPFQKGVGQTFSQPPGTGIDLGFFELDDLSKPSPEEDVFPLVICAETSLKTPSEDETPGDSVLDASPHMQITQGVLEKSNGAGPFLIKVVRQILWIDGVRYELRELFGIASSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECANALRIQSNKCPICRQPIEEFIEIKVNSGNQ* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1597 376 SMART ring_2 321 359 IPR001841 -
Pvu6g1597 376 Pfam Zinc finger, C3HC4 type (RING finger) 319 365 - -
Pvu6g1597 376 SUPERFAMILY RING/U-box 314 366 - -
Pvu6g1597 376 ProSiteProfiles Zinc finger RING-type profile. 321 360 IPR001841 -
Pvu6g1597 376 PANTHER MAHOGUNIN 27 375 IPR045194 GO:0061630
Pvu6g1597 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 27 375 - -
Pvu6g1597 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 370 IPR013083 -
Pvu6g1597 376 MobiDBLite consensus disorder prediction 56 74 - -
Pvu6g1597 376 MobiDBLite consensus disorder prediction 1 76 - -
Pvu6g1597 376 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 320 360 IPR045195 -
Pvu6g1597 376 MobiDBLite consensus disorder prediction 22 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1597 Pvu-Chr6 26665498 26669217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1597 123 376 C3H Transcription Factor Family AT3G06140 61.569 4.27e-108 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1597 - - vra:106775674 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1597 6 26665498 26669217 Pvu6g1597 6 26665498 26669217 ECH