Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1596 ATGGGTATCTCATGGAGTGGCAGAAGAAGAAACAATTACATCCAAAATCCACCACCTCCACTCCCACCTCCCCCTTACTATTACCCTCCCCAATCCCACCACCCTCCCCTTCCGCCGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTACGCCCCAAACAGCAACAACTATGCCGCTCCCCCTCCCTTGGTTCCACCACCACAGCCGCCGCCGCAGACCCATTCCATCTCCTTCTATTACACCAACCAGAGTGCCTATCCCAACTACGCCAATTCCGCGCCCAATCGCCTTCAATACCAACCCTTCTACCACCCTCAGCCTAGCGTGTGGCCCGCCGCCACTGGTGCCCCTGCCTCCACTCCTCCGCCCTATGTCGATCACCAGGCCGCGAAGAAGATAAGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTTCTACTTTGCCAAAGAAGAAGAAAAATGTAGATTTGTTCCATTATTTCCCGATGCATTTCAGCCAGTCAGAATCCCCTTTCAGAAAGGAGTTGGCCAGACATTTTCCCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGAAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACAAGTTTGAAAACACCCTCAGAAGATGAAACTCTGGGTGATTCCGTGCTAGATGCATCACCTCACATGCAAATAACGCAAGGTGTCTTAGAGAAAAGTAATGGTGCTGGTCCTTTCCTGATAAAAGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTCGATATGAGTTGAGAGAGTTATATGGAATAGCAAGCTCATCGGCAGCTGATTTTGACGACAATGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAAGCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGAGTGTGCAAAATCTCTGCGACTTCAATCTAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAAGTAAACAATGACAATCAATAA 1140 0.4807 MGISWSGRRRNNYIQNPPPPLPPPPYYYPPQSHHPPLPPPPQGYFLPSTTTYAPNSNNYAAPPPLVPPPQPPPQTHSISFYYTNQSAYPNYANSAPNRLQYQPFYHPQPSVWPAATGAPASTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVFYFAKEEEKCRFVPLFPDAFQPVRIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKPSPEEDVFPLVICAETSLKTPSEDETLGDSVLDASPHMQITQGVLEKSNGAGPFLIKVVRQILWIDGVRYELRELYGIASSSAADFDDNDPGKECVICMTEAKDTAVLPCRHMCMCGECAKSLRLQSNKCPICRQSIEELIEIKVNNDNQ* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1596 379 ProSiteProfiles Zinc finger RING-type profile. 324 363 IPR001841 -
Pvu6g1596 379 MobiDBLite consensus disorder prediction 60 75 - -
Pvu6g1596 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 373 IPR013083 -
Pvu6g1596 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 378 - -
Pvu6g1596 379 SMART ring_2 324 362 IPR001841 -
Pvu6g1596 379 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 323 363 IPR045195 -
Pvu6g1596 379 MobiDBLite consensus disorder prediction 15 45 - -
Pvu6g1596 379 PANTHER MAHOGUNIN 1 378 IPR045194 GO:0061630
Pvu6g1596 379 SUPERFAMILY RING/U-box 316 369 - -
Pvu6g1596 379 Pfam Zinc finger, C3HC4 type (RING finger) 322 368 - -
Pvu6g1596 379 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1596 Pvu-Chr6 26659873 26663770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1596 126 379 C3H Transcription Factor Family AT3G06140 63.137 9.79e-110 324