Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1594 ATGTCTCACATAGCTGTCGAGAGGAACCGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCGTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATCGGGGGTGTCATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAGGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTAAGCCCTAGCCCTGGTCCGAGTCCACGAACACTGCAGCCAACGTTTCATCAACTTGATAACTCCTCCATAATTGGGACCAATTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTTCTGTTGCAGATGTTGAAGTGAAAATATCGGGTTCAAATGTGATCTTGAAAGTCATTTCCCAAAGAATTCCTGGTCAAGTTGCAAGGATCATAACTATTTTGGAAAGTCTTTCCTTTGAAGTTCTTCATCTGAACATCAGCAGCATGGAGGAGACTGTCCTTTACCAGTTTGTGGTCAAGATAGAACTGGGATGTCAACTAAGTCTGGAGGAACTAGCAATAGAAGTGCAACAAAGCTTCTACTCAGAGCCTATAAGTATGCTGTGA 576 0.4201 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPTFHQLDNSSIIGTNSFKELGASCNSSVADVEVKISGSNVILKVISQRIPGQVARIITILESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAIEVQQSFYSEPISML* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1594 191 SMART finulus 4 55 IPR011598 GO:0046983
Pvu6g1594 191 PANTHER TRANSCRIPTION FACTOR MUTE 1 188 - -
Pvu6g1594 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Pvu6g1594 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Pvu6g1594 191 Gene3D - 1 64 IPR036638 GO:0046983
Pvu6g1594 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 188 IPR044283 GO:0003700|GO:0010052
Pvu6g1594 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1594 Pvu-Chr6 26628564 26630324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1594 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.829 3.95e-87 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu6g1594 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1594 - - gmx:100810771 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1594 6 26628564 26630324 Pvu6g1594 6 26628564 26630324 ECH