Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1586 ATGGATCAGAACAGGAATGGTGAACCAGGAAGAGGAATTGGTTCAGCTCCAGCACAAGAAGCACATAACAAGAACCAATATGAATCCAACCCCGTGATGTCACCTACTACAAATCCTCCTGTTCAGACCGTTGGTCCTTCTGTCCCTCTGAACCGACAGCAGCAACAACAGGAGCAGTTGCAGGAAAAAGTCAAGAACTTCTGGGCACAACAGCTGAAGCGAATTGAGGAGGGCACTGATTTAAGGAGTCGTCCTAGTATGCCTCTGTCGAGGATTAAGAAGATCATGAAGAGTGATCCAGATGTGAAGTTGGTTTCAGCTGAGACTCCTGTGCTGTTTTCCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAAGGCTTGGGCTAACGCTGAGAACAACAGTAGGGGGAAAATCCAGAAGACTGACATTGCATCCGCAATCGCAGGGACTGAAGTGTTTGATTTTCTTGATGATATTGTCCCTATTCCTAAGAATGACACAAACACAATGATGCATCAAATGCTTGCAGGCAATGCTCCACCTCCAACTGATCATGTTCCTCCTCAACAGGTTGCAAGCCCACCATTTCAGTCTGCTGCTTCTGCAACTCTTCATCAAGTTCCTCATGCGCTGCAAACCTATCCTCTGATTCCAACTTCAACTGTCCCTCCCAATCAGCAAGACCCTTCTCCTGATTCAGATGATGGAACAAATTAA 723 0.4633 MDQNRNGEPGRGIGSAPAQEAHNKNQYESNPVMSPTTNPPVQTVGPSVPLNRQQQQQEQLQEKVKNFWAQQLKRIEEGTDLRSRPSMPLSRIKKIMKSDPDVKLVSAETPVLFSKACELFIMELTMKAWANAENNSRGKIQKTDIASAIAGTEVFDFLDDIVPIPKNDTNTMMHQMLAGNAPPPTDHVPPQQVASPPFQSAASATLHQVPHALQTYPLIPTSTVPPNQQDPSPDSDDGTN* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1586 240 SUPERFAMILY Histone-fold 82 178 IPR009072 GO:0046982
Pvu6g1586 240 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 25 197 - -
Pvu6g1586 240 MobiDBLite consensus disorder prediction 19 61 - -
Pvu6g1586 240 Gene3D Histone, subunit A 48 163 IPR009072 GO:0046982
Pvu6g1586 240 MobiDBLite consensus disorder prediction 192 240 - -
Pvu6g1586 240 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 25 197 IPR027170 GO:0003700|GO:0006355|GO:0016602
Pvu6g1586 240 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 86 149 IPR003958 -
Pvu6g1586 240 MobiDBLite consensus disorder prediction 180 240 - -
Pvu6g1586 240 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1586 Pvu-Chr6 26536989 26537711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1586 64 163 CCAAT-HAP5 Transcription Factor Family AT1G56170 56.000 1.21e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu6g1586 CBFD_NFYB_HMF 1.3e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1586 K08066 - gmx:100808341 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1586 6 26536989 26537711 Pvu6g1586 6 26536989 26537711 ECH