Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1585 ATGGATCAAAACCAGCATGGTGAAGCAGGAGGAAAGGGTCCAGCTCCAGCAGAAGAAGAAGCACCCAACACCAATCCTCCAACTCAGACCGTTGGTGTTACTGGAGGGAATCGTTATGATCGGCAATGCATGCAGCAGCAGCAGCAAGAAAAAATGCAGCAAAGGGTAAACAGCTTCTGGGCAAGACAGTTGAAGGAAATTGAGGAGAGCACTGATTTGAAGAGTCACAGCTTGCCTCTGGCGAGGATTAGGAAGATCATGAAGTTTGATGAGGATGTGAAGATGGTGTCAACTGAGGCTACTATGCTGTTAGCCAAGGCCTGTGAACTGTTCATTATGGAGCTTACAATGAGGGCTTGGGCGAACGTTGAGGATGATAAAAGGAGGATAATTCAGAAGACTGATATTTCATCTGCAATCTCAATGAGTGATGTGTTTGATTTTCTTGTTGACACTGTTCCCAGGGATGACACAGTCACAGTGGGACCTCAACTGCTTGCAGGCATTGCTCCAACACCAAATCAGAATGCTCCTTACCCTTATATGTCAATTCCTGATCAGCATGTTGCAGGCCCACCACCACCATATGCTGCTCCAACAAATGCTCCTGAAGATGCTGCAAATCCATCCTGTTCCAACTCCGATCCAACCCCAAATGAACAAGACACTTCCAGTTCGGATGATCATTGA 690 0.4667 MDQNQHGEAGGKGPAPAEEEAPNTNPPTQTVGVTGGNRYDRQCMQQQQQEKMQQRVNSFWARQLKEIEESTDLKSHSLPLARIRKIMKFDEDVKMVSTEATMLLAKACELFIMELTMRAWANVEDDKRRIIQKTDISSAISMSDVFDFLVDTVPRDDTVTVGPQLLAGIAPTPNQNAPYPYMSIPDQHVAGPPPPYAAPTNAPEDAANPSCSNSDPTPNEQDTSSSDDH* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1585 229 MobiDBLite consensus disorder prediction 177 229 - -
Pvu6g1585 229 MobiDBLite consensus disorder prediction 22 48 - -
Pvu6g1585 229 MobiDBLite consensus disorder prediction 205 221 - -
Pvu6g1585 229 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 206 - -
Pvu6g1585 229 MobiDBLite consensus disorder prediction 1 48 - -
Pvu6g1585 229 Pfam Core histone H2A/H2B/H3/H4 30 140 IPR007125 GO:0003677
Pvu6g1585 229 SUPERFAMILY Histone-fold 33 149 IPR009072 GO:0046982
Pvu6g1585 229 Gene3D Histone, subunit A 39 155 IPR009072 GO:0046982
Pvu6g1585 229 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 19 206 IPR027170 GO:0003700|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1585 Pvu-Chr6 26531779 26532468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1585 56 182 CCAAT-HAP5 Transcription Factor Family AT1G56170 55.118 4.64e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu6g1585 Histone 1.5e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1585 K08066 - gmx:100807580 172.555