Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1584 ATGGATCAAAAGAAGGGTGGTGAAGCAGAAAAAGAAGGACGCGGCAAGAGCAAAATTGAATCTGACCCCATGACGGCTCCTCCTCCCAGTCCTCTGGCTCTGACTATTGGTCCTTCTGTCCCTTCATCTCAGCCACAGCCGCTGCCACGAGAATCATTGGAGCAGAAACTGGAGAAGTTCTGGGCAGAAAAACGGGAGGAAGTTAAGGAGATCTCTGATTTCAAGAATCACTGCTTGCCTTTGGCTAGGATTAAGAGGATAATGAAGGCTGATGGGGATGTGAAAATGGTGTCAGCTGAGGCTCCTGTGGTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAGCTCACAAAGAGGGCATGGGATAATGCTGAGGAGAACAAGAGGAAGATACTTAGTAAGAGTGACATTGCATCTGCAATGTCAAAGTCTGATATGTATGATTTTCTTGTTGATATTGTCCCCAGGGAAGACACAAGGCCTCATCCAGTGTTTGCAGGCATACCAGGAACAGCCATTGCTCCAACCTATCCTATACCACCTCATCAACATGCTGCAGACCCACAATCTGGTGATCCAACAATGCTCATGGGAATGCCCATTCTTGATCAAAATTATCCTGAGCTGCAAACCCTTCCTTCTCCAACTCCAATGTCGCCCAACCCCGAACAAGAAAACAACCATGCTCCTGAGTCAGATGACTGA 705 0.4723 MDQKKGGEAEKEGRGKSKIESDPMTAPPPSPLALTIGPSVPSSQPQPLPRESLEQKLEKFWAEKREEVKEISDFKNHCLPLARIKRIMKADGDVKMVSAEAPVVFAKACEMFIMELTKRAWDNAEENKRKILSKSDIASAMSKSDMYDFLVDIVPREDTRPHPVFAGIPGTAIAPTYPIPPHQHAADPQSGDPTMLMGMPILDQNYPELQTLPSPTPMSPNPEQENNHAPESDD* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1584 234 MobiDBLite consensus disorder prediction 1 19 - -
Pvu6g1584 234 MobiDBLite consensus disorder prediction 177 234 - -
Pvu6g1584 234 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 79 141 IPR003958 -
Pvu6g1584 234 Gene3D Histone, subunit A 45 156 IPR009072 GO:0046982
Pvu6g1584 234 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 47 213 IPR027170 GO:0003700|GO:0006355|GO:0016602
Pvu6g1584 234 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 47 213 - -
Pvu6g1584 234 MobiDBLite consensus disorder prediction 1 54 - -
Pvu6g1584 234 MobiDBLite consensus disorder prediction 36 50 - -
Pvu6g1584 234 SUPERFAMILY Histone-fold 64 150 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1584 Pvu-Chr6 26522505 26523209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1584 60 226 CCAAT-HAP5 Transcription Factor Family AT1G54830 51.462 1.24e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu6g1584 CBFD_NFYB_HMF 4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1584 K08066 - var:108342662 221.861