Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1577 ATGGAAAACTTCATCTCTTCATCTTCTTCTCTGTCACCCATTCCATCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTTCGAAGACTCCTGCAGTATATGCCTGGAGCCCTTCACCTTTCACGAACCATCCACTGTTACCAGTTGCAAGCATGAATATCATCTGCATTGCATTCTTGAATGGTCACAAAGAAGCCAAGAATGCCCAATTTGTTGGCAATCTCTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTTGAAGATGAAAAACGCATGAGATCAAGAAACACGACTACATTTCGTGCTCCCCTTGAACAGCTTAATGATGCCTACGATGATGATTCATTCTCAGATGACTCTGATTCTGATGACCAGATTATGAGGCGCTTAGTTGCTGCTGCAAATAGAGCTCGTCTTGTTCAGAGACAGGAAAGGAATAGATCACCTGGTGCTGGTCCATCAGATGTTCTTGATATTAACTCTTCCATACATGTATCTGGGGTGCAAACAGTTGCAACTTCACCATCCTGGGGTAGTTTGTCTGCCTCTGGTGTAACCTCTACATTTAATAGTCAACCTCCGGTTTTAAACACTACACCCGAGAGTGCAAGTCAACCAAACACTTCTGAGATGTTTTCCTTCCCAGAATCCTTCAAATCCAAATTTTCTGCTGCTTCAACCAGATATAAGGAATCAATTTCAAAAGGTACACGGGGCCTCAAAGAGAAGCTACTTGCCCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGAGAGATGAATGCAGGCATTGCTGGAGTTGCACGGATGATTGAACGCCTTGATCTTTCAAAACGGTCCAGTTCTCCTATCATTCCAGTCCATAGTGAAGGAACTTCAGACTTCCCAAAAGAAGGGAAGAAGTATGTTGGAGAGAATGGCATTGAGGGTTCTCCTAGTAAAGAGAGTGAAGGTGCAGTTCATGATGTTAGTTCGGATGTTCCCCCATTTACTACTAACACGCAATCTTTTCGAATGGAAATTCCTCCATATGTTCAGGGTGGACATGATAAGCTATGA 1083 0.4367 MENFISSSSSLSPIPSISAPSSSAPFDDSFEDSCSICLEPFTFHEPSTVTSCKHEYHLHCILEWSQRSQECPICWQSLALKDPASQELLAAVEDEKRMRSRNTTTFRAPLEQLNDAYDDDSFSDDSDSDDQIMRRLVAAANRARLVQRQERNRSPGAGPSDVLDINSSIHVSGVQTVATSPSWGSLSASGVTSTFNSQPPVLNTTPESASQPNTSEMFSFPESFKSKFSAASTRYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSKRSSSPIIPVHSEGTSDFPKEGKKYVGENGIEGSPSKESEGAVHDVSSDVPPFTTNTQSFRMEIPPYVQGGHDKL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1577 360 Pfam Ring finger domain 32 74 IPR001841 -
Pvu6g1577 360 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Pvu6g1577 360 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 340 - -
Pvu6g1577 360 SMART ring_2 34 74 IPR001841 -
Pvu6g1577 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 340 - -
Pvu6g1577 360 MobiDBLite consensus disorder prediction 188 215 - -
Pvu6g1577 360 SUPERFAMILY RING/U-box 31 81 - -
Pvu6g1577 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 106 IPR013083 -
Pvu6g1577 360 MobiDBLite consensus disorder prediction 290 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1577 Pvu-Chr6 26480908 26483788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1577 28 82 C3H Transcription Factor Family AT4G00335 45.455 3.53e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1577 K19043 - gmx:100805449 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1577 6 26480908 26483788 Pvu6g1577 6 26480908 26483788 ECH