Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1570 ATGAGTTGCTTCCCATGCTGCAAATCAGATACCAAATCATCCTCTACCGGGGCTGTCTCCGGCAAAGTTTCCAAAGGAAGGAGAACATTCAAATCAGTAGCTGCGGCCATGTCTCTTAAAACAGGCAGCAGCAGGCATAGACAAATAGACGCAGAGATAAGAAAATTTGGAGCTGTGAAAAATGATGTCAAAGTATTCACATATGCACAACTTGGTGAAGCCACAAACAACTACAGTTCTGATAACCTGGTGGGTGAAGGTGGATTCGGGAACGTTTACAAAGGATACATAGACAGTGTTGGACAACCTGTAGCTGTGAAGGTACTGAACAGGGACGGAGCACAAGGAACGCGCGAATTTTTTGCAGAAATTTTGATGCTAAGTATGGTGCAGCACCCAAACCTTGTGAGGCTCATTGGCTATTGTGCAGATGACCACCATAGGATTTTGGTTTATGAATTCATGGCTAATGGGAGTTTGGAAAATCACCTTCTAGACTTAGAAGAAGGCAAGGAGCCTTTGGATTGGAAGATCAGGATGAAAATAGCTGAGGGAGCAGCTAAAGGACTTGAATATTTGCATAACAGTGAAGATACTCCTATTATATACCGTGATTTCAAATCATCTAATATACTGTTAGATGACAACTTTAATCCTAAGCTCTCTGATTTTGGCCTTGCTAAGATTGGTCCTTTAGAAGGCCAGGAGCAGGTGACAACCAGGGTGATGGGAACTTTTGGTTATTGTGCACCAGAGTATGCTGCTACGGGTAAACTTAGCACAAAGTCGGATATTTATAGTTTTGGGGTCGTGTTTTTGGAAATAATCTCGGGTAGGAGAGTATTTGACACTACAAGAGCTACAGAAGAGCAAAACTTGATTGATTGGGCACAACCTTTGTTTAAAGACAGAACGAAGTTTACTCTTATGGCTGATCCTTTGCTTAAAGGTCAGTTCCCTGTGAAGGGACTATTTCAAGCCCTTGCAGTGGCAGCAATGTGTTTACAAGAGGAACCTGACACACGACCTTACATGGACGATGTTGTGACAGCTCTTGCACATCTAGCAGTGCACAAAGTTGAAGAGAAAGACTTAGCCGGGGACTCTATAAAATGTGCTGGCCATGTTGAATCTTTCAGAGCTACAAGCTCTGCTGGATCCGAAAGGGCGTAG 1173 0.4331 MSCFPCCKSDTKSSSTGAVSGKVSKGRRTFKSVAAAMSLKTGSSRHRQIDAEIRKFGAVKNDVKVFTYAQLGEATNNYSSDNLVGEGGFGNVYKGYIDSVGQPVAVKVLNRDGAQGTREFFAEILMLSMVQHPNLVRLIGYCADDHHRILVYEFMANGSLENHLLDLEEGKEPLDWKIRMKIAEGAAKGLEYLHNSEDTPIIYRDFKSSNILLDDNFNPKLSDFGLAKIGPLEGQEQVTTRVMGTFGYCAPEYAATGKLSTKSDIYSFGVVFLEIISGRRVFDTTRATEEQNLIDWAQPLFKDRTKFTLMADPLLKGQFPVKGLFQALAVAAMCLQEEPDTRPYMDDVVTALAHLAVHKVEEKDLAGDSIKCAGHVESFRATSSAGSERA* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1570 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Pvu6g1570 390 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1570 390 CDD STKc_IRAK 84 352 - -
Pvu6g1570 390 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Pvu6g1570 390 Pfam Protein kinase domain 78 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1570 390 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 388 - -
Pvu6g1570 390 SUPERFAMILY Protein kinase-like (PK-like) 63 350 IPR011009 -
Pvu6g1570 390 Gene3D Transferase(Phosphotransferase) domain 1 155 374 - -
Pvu6g1570 390 PANTHER OS07G0668900 PROTEIN 1 388 - -
Pvu6g1570 390 Gene3D Phosphorylase Kinase; domain 1 29 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1570 Pvu-Chr6 26403392 26405713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1570 1 355 Glycoside Hydrolase AT3G07070 52.909 1.35e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pvu6g1570 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1570 - - var:108343506 700.279