Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1565 ATGATGCAGCAGCCAGGACTCGGCATGGCTCCTCCCACCATGGGGCAGCAGCCACCGCAACAGTATCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCTCCGCCCATGTGGGCTCCTTCCACCCAGCCTTCGTCGCAGCAGCAGCCCACCAGCGTTGACGAGGTCCGGACCCTATGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTCTACACCTGCTTTGCATCTACCGGCGAGGTTACATCTGTCAAAGTGATTCGTAATAAGCAAACTAGTCAATCAGAAGGTTATGGGTTTATTGAATTTAATAGTCGTGCTGCGGCAGAGAGAATTCTCCAAACATATAATGGAGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGACGCCACGATGATTCTCCAGATTACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCCCGTTACAGTTCAGTAAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACAAAAGGTTATGGCTTTGTTAGGTTCGCAGATGAGAGTGAACAAGTGAGGGCCATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCAAAAGCAACGTATCAGAATTCTCAAGCTCAAGGCACACAGAACGAAAGTGATCCTAATAATACAACTATTTTTGTGGGCAATCTGGATGCTAATGTCAGCGATGATCATTTGAGGCAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATACCAGCTGGCAAGCGATGTGGTTTTGTCCAATTCGCTGACAGGAGCTGTGCTGAAGAGGCACTTCGGATGTTAAATGGGACACTATTGGGTGGACAAAACGTTCGTCTGTCATGGGGACGCAGTCCTTCAAACAAACAGGGTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGTGGATACTATGGGTATGCACAAGGCTATGAAAACTATGGTTATGCTCCTGCTGGACAGGATCCGAACGTGTATGGCAGTTATCCGGGTTATCCTGGTTATCAACCTCCTCAGCAACAGCAGCAAATAGGATATAGTTGA 1200 0.4858 MMQQPGLGMAPPTMGQQPPQQYQQPPPQQQPYVMMPPQPQAPPPMWAPSTQPSSQQQPTSVDEVRTLWIGDLQYWMDENYLYTCFASTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAAAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKATYQNSQAQGTQNESDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQGQADPNQWNGGGGYYGYAQGYENYGYAPAGQDPNVYGSYPGYPGYQPPQQQQQIGYS* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1565 399 Gene3D - 10 148 IPR012677 -
Pvu6g1565 399 SMART rrm1_1 266 333 IPR000504 GO:0003723
Pvu6g1565 399 SMART rrm1_1 66 141 IPR000504 GO:0003723
Pvu6g1565 399 SMART rrm1_1 159 233 IPR000504 GO:0003723
Pvu6g1565 399 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 19 396 - -
Pvu6g1565 399 SUPERFAMILY RNA-binding domain, RBD 148 246 IPR035979 GO:0003676
Pvu6g1565 399 CDD RRM3_NGR1_NAM8_like 264 335 - -
Pvu6g1565 399 SUPERFAMILY RNA-binding domain, RBD 28 145 IPR035979 GO:0003676
Pvu6g1565 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Pvu6g1565 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Pvu6g1565 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 330 IPR000504 GO:0003723
Pvu6g1565 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Pvu6g1565 399 CDD RRM1_SECp43_like 66 146 - -
Pvu6g1565 399 MobiDBLite consensus disorder prediction 232 264 - -
Pvu6g1565 399 Gene3D - 243 372 IPR012677 -
Pvu6g1565 399 MobiDBLite consensus disorder prediction 229 264 - -
Pvu6g1565 399 Gene3D - 149 242 IPR012677 -
Pvu6g1565 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 337 IPR000504 GO:0003723
Pvu6g1565 399 MobiDBLite consensus disorder prediction 18 49 - -
Pvu6g1565 399 CDD RRM2_SECp43_like 157 236 - -
Pvu6g1565 399 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 396 - -
Pvu6g1565 399 MobiDBLite consensus disorder prediction 379 399 - -
Pvu6g1565 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Pvu6g1565 399 SUPERFAMILY RNA-binding domain, RBD 254 362 IPR035979 GO:0003676
Pvu6g1565 399 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1565 Pvu-Chr6 26378890 26382969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1565 64 344 Eukaryotic Initiation Factors Gene Family AT2G36660 23.529 4.65e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1565 - - gmx:100801562 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1565 6 26378890 26382969 Pvu6g1565 6 26378890 26382969 ECH
Pvu3g0805 3 12206002 12210412 Pvu6g1565 6 26378890 26382969 PCT