Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1554 ATGGCTGAGGCTACACAGTCTAATGCTGAATTGTTGGAGTGGCCAAAGAAAGATAAGCGCCGCTTCCTGCATGTTGTATACCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTACACTGAATGTTTCGGGATGAAGCTTTTGAGGAAAAGAGATGTTCCAGAAGAGAAATTTGCCAATGCTTTTCTTGGATATGGTCCCGAGCAATCCCATTTTGTTGTGGAATTGACTTACAATTATGGGGTCACCTCATATGATATTGGAACTGGCTTTGGACATTTTGCTATTGCAACTCCAGATGTTCACAAATTGGTTGAAGACATCCGGGCCAAGGGTGGAACTATCACAAGGGAGCCTAGTCCAGTTACGGGTGGGACATCTGTTATTGCCTTTGTGAAGGACCCTGACGGTTATGTTTTTGAGCTCATCCAAAGACCTTCAACCCCCGAGCCATTGTGTCACGTAATGCTTCGTGTTGGTGATTTAGAGCGCTCAATAAAATTTTATGAAAAGGCTTTGGGTTTTAGGGTCTTAAAGAGGGCTGATAGACCTCAACAAAAGTATACTATAGTCATGCTTGGGTACGCAGACGAGCAAGAGACAACTGCATTGGAGCTTACATACAACTATGGTGTTACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATAGGTACAGACGATGTATACAAGAGTGCTGAGGTTGTGAACATAGTCACACAAGAGATTGGAGGGAAGATTACTCGGCAACCAGGGCCAATTCCTGGCCTTAACACAAAGATCACTTCTTTCTTAGACCCCGATGGATGGAAAACTGTTTTGGTTGACAATCAAGATTTTCTGAAGGAACTGGAGTGA 864 0.4352 MAEATQSNAELLEWPKKDKRRFLHVVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKFANAFLGYGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATPDVHKLVEDIRAKGGTITREPSPVTGGTSVIAFVKDPDGYVFELIQRPSTPEPLCHVMLRVGDLERSIKFYEKALGFRVLKRADRPQQKYTIVMLGYADEQETTALELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVVNIVTQEIGGKITRQPGPIPGLNTKITSFLDPDGWKTVLVDNQDFLKELE* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1554 287 ProSitePatterns Glyoxalase I signature 1. 154 175 IPR018146 GO:0004462|GO:0046872
Pvu6g1554 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 151 279 IPR037523 -
Pvu6g1554 287 PANTHER LACTOYLGLUTATHIONE LYASE 11 287 - -
Pvu6g1554 287 Gene3D - 1 147 IPR029068 -
Pvu6g1554 287 ProSitePatterns Glyoxalase I signature 2. 88 100 IPR018146 GO:0004462|GO:0046872
Pvu6g1554 287 ProSitePatterns Glyoxalase I signature 1. 24 45 IPR018146 GO:0004462|GO:0046872
Pvu6g1554 287 TIGRFAM glyox_I: lactoylglutathione lyase 8 153 IPR004361 GO:0004462|GO:0046872
Pvu6g1554 287 TIGRFAM glyox_I: lactoylglutathione lyase 152 282 IPR004361 GO:0004462|GO:0046872
Pvu6g1554 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 273 IPR004360 -
Pvu6g1554 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 22 142 IPR004360 -
Pvu6g1554 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 21 145 IPR037523 -
Pvu6g1554 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 152 279 IPR029068 -
Pvu6g1554 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 20 149 IPR029068 -
Pvu6g1554 287 Gene3D - 148 287 IPR029068 -
Pvu6g1554 287 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 287 - -
Pvu6g1554 287 CDD GlxI_Ni 23 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1554 Pvu-Chr6 26211601 26215939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1554 154 278 Calmodulin-binding Proteins AT1G08110 26.667 4.85e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1554 K01759 - gmx:100799447 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1554 6 26211601 26215939 Pvu6g1554 6 26211601 26215939 ECH
Pvu6g1554 6 26211601 26215939 Pvu3g0825 3 12559560 12562806 ECH
Pvu3g0825 3 12559560 12562806 Pvu6g1554 6 26211601 26215939 PCT