Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1550 ATGAAGCCTCAAGCTGCTGAGACCGATCTCTGCTCTCTCAAACGCTCCCCACCTTCAACCATGTCTTCTTCTTCCTCTTCTCTCATCACCACTCTTGTTGATCATAATAATAACCCTCCTCAGCAAAGGCCTCCTCGCCGCCGTTTTGCTTCTCACCACCTTCCTGAGATAAGCCTCAAAACTCCTATGGTTAGGCCTTATGTTCGATCAAAAATGCCCAGGCTTCGTTGGACACCAGATCTCCATCGCTGCTTCGTGCATGCAGTTCAAAGACTTGGAGGAGAAGACAGGGCCACACCAAAGTTGGTTTTACAGCTCATGAATGTAAAGGGGCTTACCATATCTCATGTCAAAAGCCACCTTCAGATGTACAGGAGCATGAAGCACGAGCAGATGAGTCAAGGTGCAAATAAGAATGATGTGGCTCCAGAGTTTCCAGCTTCCACATTCTCAACTCTGGGCCCAAGGTACGCCCAGCAGAATCCTCACCAAAGAAGCCGCACGGAAGACCTTGTTCCAATCCATGCTCAGTGGAATGATTACGAGGAAGGGAGTTACAGTGGAAAGCAAGGGGGTAAATCGATTATAGGTTGTAACGGCAATGAAGAGACGATGCACTCCTACATCATCTTCGAGGGTCTTCTCAGTGACCAGACTGTTGAAGAGGATAAAATGGCTCCTGAAAAGGTGTCACTAGGGGGTGCCACCGGATACGAAAGAGAGCATGAAAGATTCCAAGACAGAAGTACTAGTGCCATAGGAGGAGGAGGAGGAGGAGAGAGAGAGGGTGAACGCACAGTGTCCTTATCAGTGAGTTCCAGGGTTAATTCACATTCATTCTTCAATCGCAGCCACACTGGTCCAGATGCCAATGATGTCTCTCTTGAGCTCACGCTCTCTTAG 903 0.4862 MKPQAAETDLCSLKRSPPSTMSSSSSSLITTLVDHNNNPPQQRPPRRRFASHHLPEISLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRSMKHEQMSQGANKNDVAPEFPASTFSTLGPRYAQQNPHQRSRTEDLVPIHAQWNDYEEGSYSGKQGGKSIIGCNGNEETMHSYIIFEGLLSDQTVEEDKMAPEKVSLGGATGYEREHERFQDRSTSAIGGGGGGEREGERTVSLSVSSRVNSHSFFNRSHTGPDANDVSLELTLS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1550 300 MobiDBLite consensus disorder prediction 266 300 - -
Pvu6g1550 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 53 206 IPR044848 GO:0003700
Pvu6g1550 300 MobiDBLite consensus disorder prediction 234 300 - -
Pvu6g1550 300 MobiDBLite consensus disorder prediction 1 52 - -
Pvu6g1550 300 Pfam Myb-like DNA-binding domain 75 125 IPR001005 -
Pvu6g1550 300 Gene3D - 72 130 - -
Pvu6g1550 300 MobiDBLite consensus disorder prediction 13 44 - -
Pvu6g1550 300 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 53 206 - -
Pvu6g1550 300 SUPERFAMILY Homeodomain-like 71 127 IPR009057 -
Pvu6g1550 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 73 127 IPR006447 GO:0003677
Pvu6g1550 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 129 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1550 Pvu-Chr6 26170685 26173592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1550 64 130 G2-like Transcription Factor Family AT2G42660 79.104 1.87e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu6g1550 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1550 - - pvu:PHAVU_006G149000g 549.28