Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1540 ATGGACTGGACTAGAGGCCACATGCTCGGCCGTGGTTCCACCGCGGCCGTCTACATCGCCGAGTCCCACCGATCCGGTCGAGTGTTTGCCGTCAAGTCGGCGGAGCTACACCGCTCGGAATTCCTCAAAAGGGAGGAGATGATTCTTTCCACTCTAAAGTGTCCTCATATTGTGGCCTACCAAGGTTTTGACACCACATTTGAGAACGGCGTTTACTGGTTCAACATGTTCATGGAATATGCGCCTCACGGGACGCTGGCGGAGCGCGGTGGTGGCATGGAAGAAGCAGTGGTGGGATCCTACACGCGCCAAATTCTGCAGGCGCTGCACTACCTCCACTCCAATGGGATAGTGCATTGCGACGTGAAGGGGCAGAATGTGTTGGTGACGGAGGAGGGGGTGAAAATTGCGGATTTGGGTTGTGCTCGAAGGGTGGGGGAATTGTCAGCGATCGCCGGAACGCCGGCGTTCATGTCGCCGGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTCTGGGGTGCACGGTGCTGGAGATGATCACCGGGAAGCCTCCGTGGAACGGCGGCGGTGACCCGGCGGCGGTGGTTTACAGGATCGGGTTCTCCGATGAGTTGCCGGAGATTCCTAGCGGTGTGTCCGAGCAGGGGAGGGACTTTTTGGGAAAGTGTTTGAAGAGGGACCCGAATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAATGCACGGAATTGAAGTTGTTTTTGTTGGATTCAGACACTCCAACTGGTGTGTTGGAACGAGGATTTTGGGATTCCTTGGAGACAATTGAGCATGGAGCACGTGATTGCCCCTCTCCTAGGGACAGAATTGGTAGGTTGTTTTCGGATGAACCAGTTTGGGTATGGAACAACGATGATGATAATGATGATGAGCAATGGGTGACGGTGAGGAGCAATGAGTTCCATGAAGGATTATCCCTTCTCAAAACAGAAACTACTTTTAATATGGTTAGTGATGAGGAAACCGGTTTGGTTACTTTATGTGAACCTAAAATTGTAGCAACAAGTGTTGAATTGAGTAGATTATGGAATGCTGTTACTTGTGATGATTGTTATCCTAGAGGCAGAAACTGTGATTGTCTCTGCAGAGAATCATTATTGTCAGTTTGTGTGTTTCTAGTGATTGTTCTCCATGGAAAATTTGATTCCGATGGGATGGGAATTTTTATTTTTATCATGCATTGCCTTCTTTTTCTGCTCTCTTTCTCACTCTTTAATTCAACTTTGGATCGACCCAACACTTTTCATTTTCATCACTATAATATAATACGGGATAATGTGCGCTCCTCATAA 1362 0.4985 MDWTRGHMLGRGSTAAVYIAESHRSGRVFAVKSAELHRSEFLKREEMILSTLKCPHIVAYQGFDTTFENGVYWFNMFMEYAPHGTLAERGGGMEEAVVGSYTRQILQALHYLHSNGIVHCDVKGQNVLVTEEGVKIADLGCARRVGELSAIAGTPAFMSPEVARGEQQGFPADVWALGCTVLEMITGKPPWNGGGDPAAVVYRIGFSDELPEIPSGVSEQGRDFLGKCLKRDPNERWSVEELLGHGFVKECTELKLFLLDSDTPTGVLERGFWDSLETIEHGARDCPSPRDRIGRLFSDEPVWVWNNDDDNDDEQWVTVRSNEFHEGLSLLKTETTFNMVSDEETGLVTLCEPKIVATSVELSRLWNAVTCDDCYPRGRNCDCLCRESLLSVCVFLVIVLHGKFDSDGMGIFIFIMHCLLFLLSFSLFNSTLDRPNTFHFHHYNIIRDNVRSS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1540 453 CDD STKc_MAPKKK 2 248 - -
Pvu6g1540 453 Pfam Protein kinase domain 5 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1540 453 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 346 - -
Pvu6g1540 453 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Pvu6g1540 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Pvu6g1540 453 Gene3D Transferase(Phosphotransferase) domain 1 2 268 - -
Pvu6g1540 453 SUPERFAMILY Protein kinase-like (PK-like) 2 270 IPR011009 -
Pvu6g1540 453 PANTHER MAP KINASE KINASE KINASE 1 346 - -
Pvu6g1540 453 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1540 453 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1540 Pvu-Chr6 26114743 26116104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1540 1 296 MAP Kinase Kinase Kinase AT2G32510 50.307 1.54e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pvu6g1540 Pkinase 3.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1540 K20716 - gmx:100802174 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1198 5 33511213 33512412 Pvu6g1540 6 26114743 26116104 ECH
Pvu11g1050 11 11135969 11137311 Pvu6g1540 6 26114743 26116104 ECH
Pvu6g1540 6 26114743 26116104 Pvu6g1540 6 26114743 26116104 ECH
Pvu6g1540 6 26114743 26116104 Pvu3g0839 3 12972232 12973601 ECH
Pvu6g1540 6 26114743 26116104 Pvu7g0549 7 4331143 4344085 ECH