Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1536 ATGGCAACCTCTTCCTTACTCTTGTTTTCATGCTTCATACTACTCCTTGCAAGTTCATCACAAAGTGCAGTTCTAAACAAAATAGACTCATGCAGGCTTGCCAAATCCAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGTCATTGGCTTTGGAAAAGATGCGATTGGAGGCAAATATGGAGCAATATATAAAGTCACAGATCCCTCTGATGATCCTATAAGCCCAAAACCAGGCACACTTCGCTATGGTGTGGTGCAAACACAACCCCTTTGGATCATTTTTGCCAAAGATATGACTATTAAGCTCAAGAACGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTACAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTTATCATCCATGGCATTAGCATCCATGATTGTAAACCAAGCAAGGCTGGCCTTGTAATGAGCACCCCATCTCATGTTGGCCATCGCCAAGGCTCTGATGGAGATGGCATTAGCATATTTGCCTCCTCAAATGTTTGGATTGATCACTGTTTCTTTGCTCGTTGTTTTGATGGCTTGATTGATGTTATTCACGCCTCAACTGCCATTACCATTTCTAACAATTACTTTACCCAGCATGACAAAGTTATGCTACTAGGACACAGCGACGTGTACACGGCAGATAAAATAATGAAAGTAACAATAGCCTTCAACCGATTTGCTAGTGGTCTAATTGAAAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGCGTGGAAGATGTATGCTATAGGTGGCAGTTCTAACCCAACCATTCTAAGTGAAGCAAACTACTATGTAGCTCCGAATGACCCTGCTTCAAAACAGGTTACCAAGAGGGAAATGAAGGGAAAATTGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCCTAAACGGTGCTTATTTTGTTCCATCAGGCTATGGAAGTTGTGACCCAAACTATTCACCTTCTCAATCTTTTACTGCTGCACCTGCTTCGTTGGTTCCCGCTATAACTCTAAACGCAGGTCCCCTAACTTGTGTTGCTGGTAAAGCATGTTAG 1119 0.4245 MATSSLLLFSCFILLLASSSQSAVLNKIDSCRLAKSNWASNRQALADCVIGFGKDAIGGKYGAIYKVTDPSDDPISPKPGTLRYGVVQTQPLWIIFAKDMTIKLKNELIMNSYKTIDGRGAKVEITNGPCITIQGVSHVIIHGISIHDCKPSKAGLVMSTPSHVGHRQGSDGDGISIFASSNVWIDHCFFARCFDGLIDVIHASTAITISNNYFTQHDKVMLLGHSDVYTADKIMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDAWKMYAIGGSSNPTILSEANYYVAPNDPASKQVTKREMKGKLKSWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPSQSFTAAPASLVPAITLNAGPLTCVAGKAC* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1536 372 Pfam Pectate lyase 105 290 IPR002022 -
Pvu6g1536 372 PRINTS Pollen allergen Amb family signature 48 65 IPR018082 -
Pvu6g1536 372 PRINTS Pollen allergen Amb family signature 71 96 IPR018082 -
Pvu6g1536 372 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Pvu6g1536 372 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Pvu6g1536 372 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Pvu6g1536 372 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Pvu6g1536 372 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Pvu6g1536 372 PRINTS Pollen allergen Amb family signature 343 366 IPR018082 -
Pvu6g1536 372 SMART amb_all 99 296 IPR002022 -
Pvu6g1536 372 PANTHER PECTATE LYASE 18-RELATED 18 371 IPR045032 GO:0030570
Pvu6g1536 372 Gene3D - 25 365 IPR012334 -
Pvu6g1536 372 SUPERFAMILY Pectin lyase-like 26 363 IPR011050 -
Pvu6g1536 372 PANTHER PECTATE LYASE 18 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1536 Pvu-Chr6 26075224 26076819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1536 7 372 Polysaccharide Lyase AT1G11920 65.879 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1536 K01728 - gmx:100799106 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1536 6 26075224 26076819 Pvu6g1536 6 26075224 26076819 ECH