Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1535 ATGGCCACTTTAACCATTCTCCTAGTGCTCTCAGCATGCATTCTACCCACCTTAGCTTCACCACTGAATAACAGAGATTCAACAAAGGAGTTCAATGCCCTCTCTCCTATTCCAAACTATATCACCAAGAGTAGCCCTCAGAATGCTGTTATGAACACAATAGATTCATGCTGGCGAGCCAAAACAAATTGGGCTTCTAATCGCCAATCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCATAGGAGGAAAATTTGGTGATGTATATGAAGTCACTGACCCTTCTGACGACCCTGTAGACCCAAAACCTGGCACACTTCGTTATGGTGCAATCCAGACAGAACCCCTTTGGATAACTTTCGGCAAGGACATGGTTATCACGCTGAAGAATGAGCTCATGCTGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAAAGTGGAGATTGCAAATGGGGCTTGCATTACGATACAAGGTGTTAGCCATGTAATCATACATGGAATTGGCATTCATGATTGTAAACCGGGTGTGGGTGGCATGGTTAGGAGCACTCCTGAGCATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATTAGCATATTTGCCTCCTCCAATGTGTGGATTGACCATTGCTTTTTGGCTCGTTCCACCGATGGTCTCATTGATGTTATTCATGCCTCAACTGCAGTCACCATCTCTAACAATTACTTCACCCACCACGACAAAGTGATGCTGCTAGGGCACAGTGATGAATACAGCGCGGATAAAGTCATGAAAGTAACAGTAGCTTTTAACCGCTTTGCCAGTGACTTAATAGAAAGAATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTGAACAACCGGTATGACGAGTGGGTGATGTATGCCATTGGTGGCAGTGCCAACCCTACCATTTTCAGTGAAGGAAACTATTTTACGGCTTCAGATGATTCTGCTGCAAAACAGGTTACCAAGAGGGAAAGTAGTGAAGGTTGGAATAATTGGAAATGGAGGAGTTTTGGAGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGCACCCCATTGTATTCAGATGCTCAAACTTTTATAGCGGCCAAGGCATCCATGGTGCCCTTTTTAACTCTCAATGCAGGGCCACTTAACTGTGTTGTTGGCAAAGCTTGTTAA 1197 0.4478 MATLTILLVLSACILPTLASPLNNRDSTKEFNALSPIPNYITKSSPQNAVMNTIDSCWRAKTNWASNRQSLADCAIGFGKDAIGGKFGDVYEVTDPSDDPVDPKPGTLRYGAIQTEPLWITFGKDMVITLKNELMLNSYKTIDGRGAKVEIANGACITIQGVSHVIIHGIGIHDCKPGVGGMVRSTPEHVGYREGSDGDAISIFASSNVWIDHCFLARSTDGLIDVIHASTAVTISNNYFTHHDKVMLLGHSDEYSADKVMKVTVAFNRFASDLIERMPRVRFGYAHVVNNRYDEWVMYAIGGSANPTIFSEGNYFTASDDSAAKQVTKRESSEGWNNWKWRSFGDEFLNGAYFVPSGYGSCTPLYSDAQTFIAAKASMVPFLTLNAGPLNCVVGKAC* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1535 398 Pfam Pectate lyase 132 316 IPR002022 -
Pvu6g1535 398 Gene3D - 51 391 IPR012334 -
Pvu6g1535 398 SUPERFAMILY Pectin lyase-like 51 389 IPR011050 -
Pvu6g1535 398 PANTHER PECTATE LYASE 18-RELATED 34 397 IPR045032 GO:0030570
Pvu6g1535 398 PANTHER PECTATE LYASE 34 397 - -
Pvu6g1535 398 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Pvu6g1535 398 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Pvu6g1535 398 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Pvu6g1535 398 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Pvu6g1535 398 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Pvu6g1535 398 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Pvu6g1535 398 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Pvu6g1535 398 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Pvu6g1535 398 SMART amb_all 125 322 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1535 Pvu-Chr6 26070018 26071839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1535 4 398 Polysaccharide Lyase AT4G22080 63.797 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1535 K01728 - gmx:100803229 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0843 3 13035301 13037208 Pvu6g1535 6 26070018 26071839 PCT