Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1525 ATGCCCGCAAAATACTCTGGAATTCGAAAGAGATCAAATGAGCAGTACTTATCCAATAGTCCAAAATCAAGACAAAATGAACAAGCTCCTATTGTACTAGAAGAATGGTCAAACCGACATAGTGATAATTTTACTGGCAAAATCCCAAGAGGCTCAAGAGGTTTTGAAAGTTCAAAAAGGAGAAAGGTTAAAGAAGACTATACAATAAAATCAAAGCCTAAAGGGGGAGAAGATGTTTTTAGTTATAATAAGAGGACTACTGAATGTCCTTTTAGTAAAGAACTAGAGCCAAGAAAGTGTCTTGCTGCATTGAAGAAGAAAAGAAAATTTGAAGACAATATCTTGGCTGACCAATTGGGCGATTACAAGGATTTTGTTCCTTCAAAGACAAATTTCAGAAGCAAAGCTAGAAAAATTGATAACGTTAAGGATACAGAGCAGACTTCTAAAAAATGTCATCAGTGTTTGAAAAAGGAAAGGGCAGTGTTCGTACCTTGTACTAAATGTCCGAAAATGTATTGTTTGGGGTGCATCAGGAAATGGTATCCCAATCTTACAACATCAGACATTTCACACGAGTGTCCCTTTTGCCAAAACAATTGCAACTGCCGTGTTTGCTTGGGCTCAACAGGAACGATTAAGACATCTAACAGCAGCATCACAGATGACGAAAAGGTTCAACATCTTCAATACATGATTGACTTACTCATTCCATTTATACAACATATTTGTGAAGAACAAACTCAAGAGCACGAGATTGAAGCTAAAATACAAGGAAAATCAAGCTCTGAGATTGAGATACCACAAACATCTTGTGAAAATGAACGTATCTATTGTGACCATTGTGCTACTTCATTTACTGATCTTTATCGAAGCTGCCCCGAGTGTTCCTTTGAAATCTGCCTCAACTGTTGCAAAGAAATACGCAATGGAAGTATATCACCCCGGTCTGAAATGAAGTTTCAATATGTGAATAGGGGGTATGATTATATGCATGGTGGTGATCCATTACCAGTGTCTGGTAATTTAGGGACTTTAAGAGGTCATTCTAAGATATCTACCAAATGGAAGGCCAACAGTGATGGAAGTATCAGATGTGCACCCAAAGAAATGGGGGGATGTGGTGGCCCTGTGATGGAGCTGAAGCGCATTCTTTTAAATGGGTGGATATCAGACTTGGAAGCCAAAGCTCGTAACATTCTAAAAGGCTTTTCTAAAACTGAACAAACAACTCTTCAGAAAGAAGAAATATCAAGTTGCAATTCTAAGATAAGAGCAGCTTTTAGAGATGGCACAAGTGATAATAACTTATACTGTCCATCATCAAGTGACCTCATAAATGAAGGGCTGCCTCTCTTCAGAAAACATTGGACTCAGGGTGAACCAATCATAGTTCGTGATGTTCTTAAGCAGGGTACAGGTCTTAGTTGGGAGCCAATGGTCACATTGCGAGCCCTATCTGAAAACGTGGCTCCAGGAATCAGCTCAAATATGACTGAATTGAAGGCCATTGATTGCCTTTCTTGTTGTGAGGTAGAAATCAATACTAGTACATTCTTCAAGGGCTATACCCAAGGAAGAACACATCAAAACCTGTGGCCAGAGATGCTGAAGTTAAAAGACTGGCCTCCCTCTGACAAGTTTGATGATGTTTTGCCTCGCCATTGTGACGAGTTTATCCGCTGCTTGCCATTTCAAGAGTATTGTGATCCTCGAGCTGGGATCCTCAACCTTGCTGTAAAGTTGCCATCCCATGTTCTAAAGCCAGACCTTGGTCCGAAAACATATATTGCTTATGGGATTAAAGAGGAACTTGGCAGGGGAGATTCAGTAACAAAACTTCACTATGACATGTCTGATGCTGTGAATATTTTGATCCACACGACTGAGGTAACATTGAGTGATGAACAAAATTCAGTTATTCCAAAACTGAAAAAAGCACACATGGTCCAAGATGGGAAAGAGGGACATGGTTGCAAAAGGGTCGATGAATGCCTGAATGAAGGACTTTGCAAAGACAACAGAGAAGAATATAACTGTGCTATTTCTAAAGAATCAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATTCTGAAAAGTTAGATGCATATCTAAGAAAGCACTCTAAGGAATTTAGGCATACCTATTGCTCTCCAGTTGAAGAGGTTGTCCATCCAATTAATGACCAATGCTTTTACTTGACTTTGGAACACAAGAAGAATCTGAAGAAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAACAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTGCACACCAAGTCAGGAATCTTAAGTCATGCACAAAAGTTGCTGTAGATTTCGTGTCTCCAGAAAATGTTCATATGTGCTTGCATTTAACTGAAGAGTTCCGTCGTCTTCCTAAGAATCACAAGGCCCGAGAAGATAAACTTGAGATACAGAAAATGATCCTCTATGCTGTTGACAATGCTGTCAAAGAATTACAAGCTTTACGTTCTTGA 2514 0.3974 MPAKYSGIRKRSNEQYLSNSPKSRQNEQAPIVLEEWSNRHSDNFTGKIPRGSRGFESSKRRKVKEDYTIKSKPKGGEDVFSYNKRTTECPFSKELEPRKCLAALKKKRKFEDNILADQLGDYKDFVPSKTNFRSKARKIDNVKDTEQTSKKCHQCLKKERAVFVPCTKCPKMYCLGCIRKWYPNLTTSDISHECPFCQNNCNCRVCLGSTGTIKTSNSSITDDEKVQHLQYMIDLLIPFIQHICEEQTQEHEIEAKIQGKSSSEIEIPQTSCENERIYCDHCATSFTDLYRSCPECSFEICLNCCKEIRNGSISPRSEMKFQYVNRGYDYMHGGDPLPVSGNLGTLRGHSKISTKWKANSDGSIRCAPKEMGGCGGPVMELKRILLNGWISDLEAKARNILKGFSKTEQTTLQKEEISSCNSKIRAAFRDGTSDNNLYCPSSSDLINEGLPLFRKHWTQGEPIIVRDVLKQGTGLSWEPMVTLRALSENVAPGISSNMTELKAIDCLSCCEVEINTSTFFKGYTQGRTHQNLWPEMLKLKDWPPSDKFDDVLPRHCDEFIRCLPFQEYCDPRAGILNLAVKLPSHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHYDMSDAVNILIHTTEVTLSDEQNSVIPKLKKAHMVQDGKEGHGCKRVDECLNEGLCKDNREEYNCAISKESGGALWDIFRREDSEKLDAYLRKHSKEFRHTYCSPVEEVVHPINDQCFYLTLEHKKNLKKEFGVEPWTFEQQLGEAVFIPAGCAHQVRNLKSCTKVAVDFVSPENVHMCLHLTEEFRRLPKNHKAREDKLEIQKMILYAVDNAVKELQALRS* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1525 837 Gene3D Cupin 436 811 - -
Pvu6g1525 837 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 6 835 IPR045109 GO:0032454|GO:0033169
Pvu6g1525 837 MobiDBLite consensus disorder prediction 11 29 - -
Pvu6g1525 837 SUPERFAMILY Clavaminate synthase-like 453 833 - -
Pvu6g1525 837 Pfam JmjC domain, hydroxylase 689 785 IPR003347 -
Pvu6g1525 837 SMART cupin_9 552 802 IPR003347 -
Pvu6g1525 837 ProSiteProfiles Zinc finger RING-type profile. 152 198 IPR001841 -
Pvu6g1525 837 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 6 835 - -
Pvu6g1525 837 ProSiteProfiles JmjC domain profile. 571 802 IPR003347 -
Pvu6g1525 837 MobiDBLite consensus disorder prediction 42 62 - -
Pvu6g1525 837 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1525 Pvu-Chr6 26023442 26027457 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu6g1525 JmjC 1.8e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1525 K15601 K21989 gmx:100801772 1235.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1525 6 26023442 26027457 Pvu6g1525 6 26023442 26027457 ECH
Pvu3g0847 3 13096120 13101118 Pvu6g1525 6 26023442 26027457 PCT