Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1524 ATGACCACACATTCAACCACAAAACCAAAAGCACACCATCTTTTCCTTCTCTTAATTCAGTTGTTAATTTCCACAAGAGTCAAAGGTAAGTGTGATTCTGGTTGCGACCTTGCTCTAGCTTCCTACTACATAAGCGAAGGCACGAACCTCACTTCCATTAGCACTCTTTTCGGAAAGCCCACATCGGAGATTCTCAAGTACAACCCAAGCGTGAAAGACCCAAACGTGATTAAAAGCCGAACAAGAATCAACGTGCCGTTCTCGTGTGAGTGCTTAAACAGTGTGTTTTTGGGACACACTTTCTCGTACCGGATCCAACACGGGAACACCTACAAGGTGGTTGCGGACTCTGTTTTCTCGAACCTGACCACCGAGGATTGGGTGAGCAGGGTCAACAGTTACCAGTCCAATAATATTCCCGACAACGTCAACATCAACGTCACCATCAACTGCTCCTGCGGAAACCGACATGTGTCCAAGCATTATGGGCTGTTTTTGACGTTCCCGCTTCGGCTGGGTGATGACTTGAAAGGGGTTGCGGCGGAATCCGGTGTGCCGGCGGAACTGCTGGTACGCTACAACCCCACCTCCGATTTCAGTTCTGGGAATGGGCTCGTGTTCGTGCCGGCTAAAGATGAAAATGGAAACTTTCCACCTATGCTGCTGAGATCAGTAGGAATATCTAGTGGAGCTATTGCCGGCATAGCCGTTGGAGGAGCTGCTGGGGTCTTAATTTTGGCACTTGTTCTATATGTTGGTCTACACAGAAGAAGGAAAGTGGCTGAGGTGTCCCTTCTCGCAGTACCAGGAGCATCTGAAGATCAGTGTAGTCCACTCTATCATGGTGTTGGTTTGGGAAGCAGCTTGGACAAGGCATCGGAATCTTCTGTTGTTGCTTCTCCAAGGTTGACAGGGATTACAGTGGACAAGTCAGTGGAGTTCTCATATGGGGAGCTAGACAAGGCCACTGATGGCTTTAGTGTGGCTAATATAATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGGAGTGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTGCAGAACTAAAGGTTCTAACGCATGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTATATTGAGAACGGCAATTTAAGCCAACATTTGCGAGGCTCAGGGAGGGATCCGTTAACATGGGGAGCTAGAGTGCAAATTGGTCTTGATGCAGCAAGAGGATTGGAATACATCCATGAACATACAGTTCCAGTCTACATCCATAGAGATATAAAATCAGCAAACATTTTGATAGACAAAAACTTTCGCGCAAAGGTTGCAGATTTTGGTCTCACAAAATTGACTGAGTATGGTAGTTCTTCATTACACACGCGTCTTGTGGGTACCTTTGGTTATATGCCTCCAGAATATGCACAATATGGTGATGTTTCCTCCAAAGTAGACGTATATGCTTTTGGAGTTGTTCTCTATGAACTCATATCAGGCAAAGAAGCTATCGTCAAGACAAACGATCCTGAGAGTGAATCAAAAGGACTAGTCGCCTTGTTTGAAGAAGTTCTTGGTCTCTCAGATCCAAAAGAAAATCTTCGTCAACTTGTTGACCCTAGACTTGGTGACAACTACCCTCTTGACTCTGTATTTAAGGTATCTCAGCTTGCCAAAGCATGTACACATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTTGTCGCCTTAATGACACTTTCATCTGCAACTGAGGATTGGGATGTTGGTTCCTTCTATGAAAACCAAGCTTTAGTGCACCTTATGTCTGGAAGGTAG 1875 0.4501 MTTHSTTKPKAHHLFLLLIQLLISTRVKGKCDSGCDLALASYYISEGTNLTSISTLFGKPTSEILKYNPSVKDPNVIKSRTRINVPFSCECLNSVFLGHTFSYRIQHGNTYKVVADSVFSNLTTEDWVSRVNSYQSNNIPDNVNINVTINCSCGNRHVSKHYGLFLTFPLRLGDDLKGVAAESGVPAELLVRYNPTSDFSSGNGLVFVPAKDENGNFPPMLLRSVGISSGAIAGIAVGGAAGVLILALVLYVGLHRRRKVAEVSLLAVPGASEDQCSPLYHGVGLGSSLDKASESSVVASPRLTGITVDKSVEFSYGELDKATDGFSVANIIGQGGFGSVYYAELRSEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLTWGARVQIGLDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTKLTEYGSSSLHTRLVGTFGYMPPEYAQYGDVSSKVDVYAFGVVLYELISGKEAIVKTNDPESESKGLVALFEEVLGLSDPKENLRQLVDPRLGDNYPLDSVFKVSQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1524 624 Gene3D Phosphorylase Kinase; domain 1 307 396 - -
Pvu6g1524 624 SMART LysM_2 41 86 IPR018392 -
Pvu6g1524 624 Gene3D LysM domain 35 92 IPR036779 -
Pvu6g1524 624 Pfam Protein tyrosine and serine/threonine kinase 329 595 IPR001245 GO:0004672|GO:0006468
Pvu6g1524 624 ProSiteProfiles Protein kinase domain profile. 326 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1524 624 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 624 IPR044812 GO:0019199|GO:0045087
Pvu6g1524 624 SMART serkin_6 326 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1524 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Pvu6g1524 624 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 12 624 - -
Pvu6g1524 624 ProSiteProfiles LysM domain profile. 40 85 IPR018392 -
Pvu6g1524 624 Gene3D Transferase(Phosphotransferase) domain 1 397 608 - -
Pvu6g1524 624 CDD STKc_IRAK 332 593 - -
Pvu6g1524 624 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Pvu6g1524 624 SUPERFAMILY Protein kinase-like (PK-like) 306 596 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1524 Pvu-Chr6 26014021 26019850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1524 16 624 Receptor kinase-like Gene Family AT3G21630 55.089 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pvu6g1524 PK_Tyr_Ser-Thr 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1524 - K13429 gmx:100802308 1054.28