Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1518 ATGTGCAAGAAAGCCATGGAGGGTAGTAGTAATTCTAATGGCACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGCTGGTCATCATCCAATAAATCCTAATCCTAGTAATAATACCAATAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACGATGATAACAACAACACTGGGGTAGGGTACTATTTCAGGGAGAGTGGCCACCACAACCACCGCAACAACAACAATGGAAGCTCCTCCTCTTCTTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAACTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTTGCCAGGTTAGAGGAATCATGTGCTTCTGCGGTGACAATGGTAGGAGATGCAGCTGGATCCAGCTGCTTAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTCACCAAGTACGAACAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAAAGGATTGAGTGTCAGTTCAAAAATCTTACTATTTCTTCCTCCGACTTCGGTTGTAATGAAGGTGGTGATAGGAATGGATCATCTGAAGAGGATGTTGATGTGCAGAGCATGATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGCAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAATCTCAGAAGCTGGCTCTTGCAGAGTCCACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAACCCATCCACACTATTACGTAGATACTGTTCTGGCCAATCCATTTCCCATGGATCTCTCCCACCCCATGCTCTAG 1128 0.4601 MCKKAMEGSSNSNGTSYLLAFGENSGGLCPMTMMPLVTSHHAGHHPINPNPSNNTNNNANTNCLFIPNCSNSGTPSIMLDNNHNNNDDNNNTGVGYYFRESGHHNHRNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEESCASAVTMVGDAAGSSCLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFGCNEGGDRNGSSEEDVDVQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPTHPHYYVDTVLANPFPMDLSHPML* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1518 375 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Pvu6g1518 375 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Pvu6g1518 375 Pfam ELK domain 257 278 IPR005539 GO:0003677
Pvu6g1518 375 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Pvu6g1518 375 MobiDBLite consensus disorder prediction 82 122 - -
Pvu6g1518 375 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 6 366 - -
Pvu6g1518 375 SUPERFAMILY Homeodomain-like 279 354 IPR009057 -
Pvu6g1518 375 SMART ELK_2 257 278 IPR005539 GO:0003677
Pvu6g1518 375 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Pvu6g1518 375 Gene3D - 282 344 - -
Pvu6g1518 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 366 - -
Pvu6g1518 375 Pfam KNOX2 domain 175 221 IPR005541 GO:0003677|GO:0005634
Pvu6g1518 375 Pfam KNOX1 domain 121 160 IPR005540 GO:0003677|GO:0005634
Pvu6g1518 375 CDD homeodomain 289 341 IPR001356 GO:0003677
Pvu6g1518 375 SMART KNOX2_2 171 222 IPR005541 GO:0003677|GO:0005634
Pvu6g1518 375 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Pvu6g1518 375 MobiDBLite consensus disorder prediction 107 122 - -
Pvu6g1518 375 MobiDBLite consensus disorder prediction 82 96 - -
Pvu6g1518 375 SMART HOX_1 279 344 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1518 Pvu-Chr6 25965619 25972338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1518 122 375 Homeobox Transcription Factor Family AT1G62360 79.771 1.03e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pvu6g1518 KNOX2 7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1518 - - gmx:100805837 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1518 6 25965619 25972338 Pvu6g1518 6 25965619 25972338 ECH
Pvu3g0851 3 13169130 13174423 Pvu6g1518 6 25965619 25972338 PCT