Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1510 ATGGACGGTGTAGATGCTGGGGCTCCAAGGAGGAGGACTTTCAAGGAACGCTTCGGATTCATAGGCATTGGCTGTTGTGGGGCCACATGGGGCTTCCGTTCTGACGCGTTAACTTTCACCCACGGGGAACAGCAGCAGCAGCAGCAAGCGAACCAGCAGGAAACGGATCCGAGTCGAGGGTCGGGTCCGGAATGCGTGGATCCTGCTGCGACGGGGTCCGGTATGAACCTGGCGGCGGCGCTTGCGGCTGAGCGGCAAATCCGGGGGCCGCAGGAGGATGCGGCGGCAGCGAGGGCACCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGAGCGAAGGAGGGGAGTCGGCGGCGGTGGAGAAGGAAAAAGAGGAGGAGAAGGGTGGTGTTGTGGGGAATGATTCAGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATCCCATGTGGTCACACTTTTTGCAGGGTGTGTTCCAGGGAACTCTGGCTTAATCGAGGGTCTTGTCCCCTCTGCAATCGTTCCATCCTCGAGATTCTCGACATTTTCTAG 570 0.6053 MDGVDAGAPRRRTFKERFGFIGIGCCGATWGFRSDALTFTHGEQQQQQQANQQETDPSRGSGPECVDPAATGSGMNLAAALAAERQIRGPQEDAAAARAPGTPWRVSLMRLLEESEGGESAAVEKEKEEEKGGVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1510 189 MobiDBLite consensus disorder prediction 41 59 - -
Pvu6g1510 189 PANTHER OS01G0917900 PROTEIN 1 189 - -
Pvu6g1510 189 SUPERFAMILY RING/U-box 140 186 - -
Pvu6g1510 189 CDD RING-HC 141 178 - -
Pvu6g1510 189 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 189 - -
Pvu6g1510 189 SMART ring_2 141 178 IPR001841 -
Pvu6g1510 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 189 IPR013083 -
Pvu6g1510 189 ProSiteProfiles Zinc finger RING-type profile. 141 179 IPR001841 -
Pvu6g1510 189 MobiDBLite consensus disorder prediction 41 69 - -
Pvu6g1510 189 Pfam Zinc finger, C3HC4 type (RING finger) 138 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1510 Pvu-Chr6 25872451 25873768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1510 1 189 C3H Transcription Factor Family AT4G22250 54.124 1.19e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1510 - - gmx:100804292 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1510 6 25872451 25873768 Pvu6g1510 6 25872451 25873768 ECH
Pvu3g0855 3 13250162 13251113 Pvu6g1510 6 25872451 25873768 PCT