Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1488 ATGTCTGGCGCAGAAGAAGGCTCCGAGAATCCGTTGCGGTGTCCGTTTCAGTTCTTCGTCCGCACGGTGTCGACGGGGCCCAGCATAGTGATGACCGGTTACCCGGAAGAAACAGTGAAATCTGTCCTTGTGAAGATCGCGTGGGTGACGGGAATGCCGCTGAGAGAACTGAGAGTGATATACAAGGGAAAACAGCTTCAATTGGAGAAGGCTCTGGTAGAGTGCGGCATCGAGAACGATTCCAATCTCAACATCGTTGGTCACTTGCGCAGCGGATTGTACCCCGCGGCGTCGCGCTCTGTCGACTATCTGCTCTCCCTGCTCGCGCACGCCTCCAGCAACACGCGGTGCGCGTGTGAGGCCTTGAAGACCGTGAAGGCTGTCTCCACGCGCCACTTCAGCCTCCCCGGTTTCGTGGAGCTCTTCGCGGTCTCTAATGCCCCCGCAATGCTGGCCTCGTTCTACCACTCGCCACGTGGATCGGGTACCAGGCAACTTGCCGAGTCTTGCATAACCAATTTCATGAGTTGCGCGCGCGCGAAGAATTGGCAGAGTGTTTCCACTGGTGTGGTGATGGAGTTTTGCAAGCAGCTTAGACAGTTTGGGCGTGGAGGCCATGATCATTTGTACCTTTCGTGTAGAAAAACTTTGGGGCTTTTGTTGAATACAATTGGGGTTTCCTATGATTTTGGGAGTGTGGAAAGGAGGGTTTCGCTTCACGATGTTTTTTCCTTTGTTCCTGAGCTTGTGGATGCCTTGTTAGTGGGCTTGGATAATAATAAACGGTGTTGGAGTACCATCACGACGCCTTCGTCAGAAGAGGTTTCGGATTTGACAATATTCTTGGCCCCTTTGAGGAATGCAATTATTCTTCAGAAGCAATTGTTGGGGGGTTTTGTGATTGGTGATGATGGAAAATGTAGTGTGGAGAAGGAGGATGATCAGTTGCTTGCGGAAGAAGTTGATTATCTTCGGCTTGTGTTTGTTCGGCTGTTGAGCAAAATGGATGAGTGTTTTCGCTGCATGGCGGTATGCTTGGCGGGCAAGGAATCTGGTTGGACGGATTTTGTTCTCTGTCCCTCATGGTCTGAATATCTTAGTATCTTGAAGGATTTGTATGATACTTCTAAGGTCTTTGATGATGCGGAGGAAATGTTTTGGACAGTTTTGAGGTTTCATAAGAATATGCTGTCTGCGCTTGTTGTTGGGTTTGTGAGGAGAGATGGTGATCATCGATGGGTTCTTGATAACAAGAGTGTGACCAATTTTGAGTGTAGGAGGCATTTGGCGATGATGCTGTTCCCTACTGCAAACGAAGACTTTGACATGTTTCATGAGATGCTTATTGACAGGTCTCAGGTACTGGTGGAGTCTTTTGAGTACATAAGACGAGCGAACCCGGAGTCACTCCGTTCTGGTCTGTTTATAGAATTCAAAAATGAGGAAGCTACAGGACCGGGTGTGTTGCGGGAGTGGTTTGCTCTGGTGTGTCGAAGAATATTTGATCCACGACGTGTTCTTTTTGTGGCTTGCCCGAATGACGGCAGGAGATTTTATCCAAATTCTGCATCTAAGGTACATCCTCGGCACCTTGAATACTTTAGGTTTGCTGGTCGAATTATTGCATTGGCTTTGTTGAAAAAGGTGCAAGTTGGTATTGTTTTTGATCGTGTATTTTTCTTACAATTGGCTGGACTTCGTGTTACCTTAGAAGATATACGGGATACAGATCCTTGCTTGTACAGAAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATACGGATGCATTAGGACTGACATTTGTTAGAGAGTTGGAGGAATTAGGATGCAGGAAAGTTGTTGAGCTATGTCCTAATGGGAAAAACATTTTATTGAATAGTCAGAACAGGGAGCACTATGTTGATCTTCTCATACAGAATTGTTTTGTAACATCCATATCTGAGCAGGTGTCAAATTTTGCCCAGGGTTTTGCTGATATTCTTTCCAGCTCAAAGCTTAAACAGTTCTTCCAATGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATACAATCTCTATTGAAGATTGGAAGGCACATACCATGTACAAGGGCTATAAAGAGTCTGATTGTCAGATATCTTGGTTTTGGGAGATTGTTAGGAGAATGTCAGCACAACAAAGGAGGATTCTGATTTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGATTCTGTGGTTTGTCTTCCCCTCTATTCATTTGCAAGACTGCAGAATCTAGCAATCGCCTGCCCTCATCTCACACATGTTTTTACCAGCTGTTTTTACCTAAGTATCCATCTATTGCTGTTATGCAAGATCACTTTGGAGTCATCACTCAAGAACACATTGCTTGTAGTTTTGGTATTAGTTAA 2418 0.4545 MSGAEEGSENPLRCPFQFFVRTVSTGPSIVMTGYPEETVKSVLVKIAWVTGMPLRELRVIYKGKQLQLEKALVECGIENDSNLNIVGHLRSGLYPAASRSVDYLLSLLAHASSNTRCACEALKTVKAVSTRHFSLPGFVELFAVSNAPAMLASFYHSPRGSGTRQLAESCITNFMSCARAKNWQSVSTGVVMEFCKQLRQFGRGGHDHLYLSCRKTLGLLLNTIGVSYDFGSVERRVSLHDVFSFVPELVDALLVGLDNNKRCWSTITTPSSEEVSDLTIFLAPLRNAIILQKQLLGGFVIGDDGKCSVEKEDDQLLAEEVDYLRLVFVRLLSKMDECFRCMAVCLAGKESGWTDFVLCPSWSEYLSILKDLYDTSKVFDDAEEMFWTVLRFHKNMLSALVVGFVRRDGDHRWVLDNKSVTNFECRRHLAMMLFPTANEDFDMFHEMLIDRSQVLVESFEYIRRANPESLRSGLFIEFKNEEATGPGVLREWFALVCRRIFDPRRVLFVACPNDGRRFYPNSASKVHPRHLEYFRFAGRIIALALLKKVQVGIVFDRVFFLQLAGLRVTLEDIRDTDPCLYRSCKQILEMDADFIDTDALGLTFVRELEELGCRKVVELCPNGKNILLNSQNREHYVDLLIQNCFVTSISEQVSNFAQGFADILSSSKLKQFFQCLELEDLDWMLHGSENTISIEDWKAHTMYKGYKESDCQISWFWEIVRRMSAQQRRILIFFWTSVKYLPVEGFCGLSSPLFICKTAESSNRLPSSHTCFYQLFLPKYPSIAVMQDHFGVITQEHIACSFGIS* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1488 805 ProSiteProfiles HECT domain profile. 466 805 IPR000569 GO:0004842
Pvu6g1488 805 SUPERFAMILY Hect, E3 ligase catalytic domain 443 788 IPR035983 GO:0004842
Pvu6g1488 805 Pfam Ubiquitin family 19 89 IPR000626 GO:0005515
Pvu6g1488 805 SMART hect_3 464 803 IPR000569 GO:0004842
Pvu6g1488 805 CDD HECTc 445 786 IPR000569 GO:0004842
Pvu6g1488 805 Pfam HECT-domain (ubiquitin-transferase) 495 794 IPR000569 GO:0004842
Pvu6g1488 805 Gene3D Hect, E3 ligase catalytic domain 566 648 - -
Pvu6g1488 805 Gene3D - 15 94 - -
Pvu6g1488 805 SUPERFAMILY Ubiquitin-like 16 94 IPR029071 -
Pvu6g1488 805 ProSiteProfiles Ubiquitin domain profile. 16 92 IPR000626 GO:0005515
Pvu6g1488 805 Gene3D Hect, E3 ligase catalytic domain 688 803 - -
Pvu6g1488 805 Gene3D Hect, E3 ligase catalytic domains 448 680 - -
Pvu6g1488 805 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 11 803 - -
Pvu6g1488 805 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 11 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1488 Pvu-Chr6 25688688 25693251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1488 17 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.065 2.14e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1488 - - var:108341618 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0875 3 14126169 14132678 Pvu6g1488 6 25688688 25693251 PCT