Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1480 ATGGTTTCGCTGGAGGAATCACGCTCTAATTCGAGCCGTTTCCCCTTGCCCAGGAATTACCAGTACCACTCCTCGGTTTCGTCCAAAACGCAGCGTCATATAGGAAGGTCCATGCGCACGATACGCTCCAATTTCTTCCAAGACGACAACAGCAGCTGCTCCTTCACTGATAAATCCACCTGTATATCGGAAAACCTCACCGATTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCGTCGCGGAACAACAAATCGTTGAAATCCTCACCCGCGGAGGAGGACTTCCTCGACCTCTCCCAGGCCTTCAGCGATTTCTCTGCATGTAGCAGCGACATCTCCGGCGAGCTGCAGCGCCTCGCGACACTCCCATCACCAGAATGCGTGCAGAAGAGCGATATATCCGGAGAGGTGGAGGTAGAACCGGAGCCGGAGCCCTGCACGGGTTTCCTGCAGAGGGAGAGTTTCTCCACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAGATTTGCATCGACGGCCTCCAGTCTCAGTCAGTGGCGGTGAAGCGCTCCGCGGCGGCGAAGCTCCGGCTGCTAGCGAAGAACCGCGCCGACAACCGCGTTCTGATCGCGGAGTCCGGCGCGGTGCCGGTTCTTGTTCCGCTTCTCCGGTGCAGCGATCCTTGGACGCAGGAACACGCTGTCACCGCGCTGTTAAACCTATCTCTCCACGAGGAAAATAAAATGCTGATAACTGATGCCGGGGCAGTGAAGTCGCTGATTTATGTACTGAAGACGGGAACGGAAACTTCGAAGCAGAACGCGGCATGCGCGCTTCTAAGCCTGGCGTTGGTGGAAGAGAACAAGAGCTCCATCGGGGCTTCCGGAGCGATACCGCCCTTGGTTTCGCTTCTTCTAAACGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACGCTTTATAAACTGTGTTCTGTGAGGCAGAACAAGGAGAGGGCAGTGAGCGCCGGTGCGGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGCGGCATGGCGGAGAAGGCCATGGTGGTGCTCAACAGCCTGGCGGGGATTCAGGAAGGGAAGGACGCGATTGTGGAAGAAGGTGGGATCGCTGCCCTTGTGGAAGCCATTGAGGATGGGTCTGTGAAGGGGAAGGAGTTCGCGGTTCTGACCCTCCTTCAGCTCTGTGTTGACAGTATCACAAACAGAGGGTTTCTTGTTAGAGAGGGAGGCATTCCTCCTCTCGTTGCCCTTTCTCAAACTGCAAGTGTTCGAGCTAAGCACAAGGCCGAAACGCTTCTTCGATATTTGAGGGAATCAAGACAAGAGGCGTCTACTTCGAGTTCTTAG 1374 0.5677 MVSLEESRSNSSRFPLPRNYQYHSSVSSKTQRHIGRSMRTIRSNFFQDDNSSCSFTDKSTCISENLTDSVVDLRLGELASRNNKSLKSSPAEEDFLDLSQAFSDFSACSSDISGELQRLATLPSPECVQKSDISGEVEVEPEPEPCTGFLQRESFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEENKMLITDAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGSGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSITNRGFLVREGGIPPLVALSQTASVRAKHKAETLLRYLRESRQEASTSSS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1480 457 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Pvu6g1480 457 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Pvu6g1480 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Pvu6g1480 457 SUPERFAMILY ARM repeat 169 446 IPR016024 -
Pvu6g1480 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Pvu6g1480 457 SMART arm_5 242 282 IPR000225 GO:0005515
Pvu6g1480 457 SMART arm_5 365 405 IPR000225 GO:0005515
Pvu6g1480 457 SMART arm_5 283 323 IPR000225 GO:0005515
Pvu6g1480 457 SMART arm_5 201 241 IPR000225 GO:0005515
Pvu6g1480 457 SMART arm_5 324 364 IPR000225 GO:0005515
Pvu6g1480 457 SMART arm_5 406 447 IPR000225 GO:0005515
Pvu6g1480 457 MobiDBLite consensus disorder prediction 1 33 - -
Pvu6g1480 457 Gene3D - 315 457 IPR011989 -
Pvu6g1480 457 PANTHER U BOX DOMAIN-CONTAINING 6 454 - -
Pvu6g1480 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 454 - -
Pvu6g1480 457 Gene3D - 157 314 IPR011989 -
Pvu6g1480 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1480 Pvu-Chr6 25613364 25616517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1480 109 450 U-box Gene Family AT2G23140 44.286 1.40e-82 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1480 - - gmx:100806768 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0880 3 14278249 14282516 Pvu6g1480 6 25613364 25616517 PCT