Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1468 ATGGGTCGTTCTCGTGGGAATTTTCATCACGCCGATGAGGATCCCAATCAGAGATCAAGGAGAAAAAAGAATGCCGCTAGTGGAGAAAACTCTGAATCTGGAGCTGCAGGCCAAGGAGCAGGTGAAGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAAGATATAACTGGAAAAATAAGAATTAAGTGCGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAACCATCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTTGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTCGCCGAGCATGTTGGAACCAAAAACAAAGAATCATGCATAGAACACTATAAGAACATATACTTGAGCTCCCCATTCTTTCCTGTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCAAAGGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTTTAAAGGCAGAATCTCCCTTCTCTCCATCTAGAGCCAAGGTTGAAGATTCACATAAAGCTGGCTCTACTAATCGTTTGTCTTCCAATCTGAATTCAGAGTTAGATTCTGGTCCCTCAGGTAACACACACTCTGCAGCTGGTGCTAACCAAAAGGCATCTCATGCCAGGGGAAAAGGTGGTCCCGGAATCATTAAAATGGAAGATTCTCAGATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCTTCAGGAAATGAAGGTCCTTCTTTAGTAGAATTGAGTGGTTACAATGCTAAAAGACAAGAATTCGATCCTGAATATGATAATGATGCTGAACAATTACTTGCTGAAATGGAGTTTAAGGATACCGATTCTGAGGAAGAGCGAGAGTTGAAACTTCGTGTATTGCGTTTATATTCAAAGAGGCTTGATGAAAGAAAGCGGAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTGGAGAAGGATTTAACACCCGAGGAGAAGGCAATATGTCGAAAATATGATATATTCATGCGCTTTCATTCTAAAGAAGATCACGATGAATTGCTTCGAACAATGCTCTTTGAGCATAGAAGTTGGAAAAAAATTCAAGAGCTTAAGGAAGCCCGGATAGCTGGTTGTCGCAATTCGGCTGAAGCTGATAGATATATCTCATCCAAGAGAAAGAGGGAAGCTGAAGAAAATGTTCGAAGGACAAGGACAAAAGAAAGTGCTCAGGTTGGCCCTAGCAATCAGGGAATTCCAAATGCATTGACTTCTCCAGATTCAGCTGGTAAGGATACAAGTGCAAGACCTGCAGGACCTGCTACTTCTAGTTCTGTCAATGAGATGGATGTGATAGGATACTCTGGAGCAGATTTACTTTGTGAAGCTGAGAAACGATTGTGCTGTGAGTTAAGATTGTCTCCAGCCATGTATCTAAAAATGCAAGAGCAACTGTCACTACAAATACTTGCTGGCACTGTCTCTGCAAAATCTGACGCTCATAAATTATTCAACAAGTTGGATGCCATAAAAATTGACAGAGTGTATGATATGCTCATTAAAAAGGGGATCGGTTTACCCTGA 1683 0.4141 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYKNIYLSSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDLSLKAESPFSPSRAKVEDSHKAGSTNRLSSNLNSELDSGPSGNTHSAAGANQKASHARGKGGPGIIKMEDSQIDRDFGGKKPTSSGNEGPSLVELSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDSEEERELKLRVLRLYSKRLDERKRRKDFILERNLLYPNPLEKDLTPEEKAICRKYDIFMRFHSKEDHDELLRTMLFEHRSWKKIQELKEARIAGCRNSAEADRYISSKRKREAEENVRRTRTKESAQVGPSNQGIPNALTSPDSAGKDTSARPAGPATSSSVNEMDVIGYSGADLLCEAEKRLCCELRLSPAMYLKMQEQLSLQILAGTVSAKSDAHKLFNKLDAIKIDRVYDMLIKKGIGLP* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1468 560 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Pvu6g1468 560 ProSiteProfiles SWIRM domain profile. 473 560 IPR007526 GO:0005515
Pvu6g1468 560 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Pvu6g1468 560 MobiDBLite consensus disorder prediction 193 258 - -
Pvu6g1468 560 MobiDBLite consensus disorder prediction 1 42 - -
Pvu6g1468 560 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Pvu6g1468 560 SUPERFAMILY RING/U-box 48 110 - -
Pvu6g1468 560 SMART zz_5 44 89 IPR000433 GO:0008270
Pvu6g1468 560 Gene3D - 41 96 IPR043145 -
Pvu6g1468 560 MobiDBLite consensus disorder prediction 1 27 - -
Pvu6g1468 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Pvu6g1468 560 MobiDBLite consensus disorder prediction 440 479 - -
Pvu6g1468 560 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Pvu6g1468 560 SUPERFAMILY Homeodomain-like 466 557 IPR009057 -
Pvu6g1468 560 SMART sant 104 153 IPR001005 -
Pvu6g1468 560 MobiDBLite consensus disorder prediction 424 439 - -
Pvu6g1468 560 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Pvu6g1468 560 Gene3D - 474 558 IPR036388 -
Pvu6g1468 560 MobiDBLite consensus disorder prediction 424 479 - -
Pvu6g1468 560 PIRSF Txn_adaptor_ADA2 35 559 IPR016827 GO:0003713|GO:0006357|GO:0035065
Pvu6g1468 560 Gene3D - 102 153 - -
Pvu6g1468 560 MobiDBLite consensus disorder prediction 214 242 - -
Pvu6g1468 560 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Pvu6g1468 560 CDD ZZ_ADA2 48 96 IPR041983 -
Pvu6g1468 560 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Pvu6g1468 560 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 558 - -
Pvu6g1468 560 CDD SANT 108 150 IPR001005 -
Pvu6g1468 560 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 558 IPR034318 GO:0003713|GO:0006357|GO:0035065
Pvu6g1468 560 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1468 Pvu-Chr6 25537193 25542428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1468 1 558 EF-hand Containing Proteins AT3G07740 47.049 3.15e-160 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu6g1468 Myb_DNA-binding 6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1468 K11314 - gmx:100811887 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1468 6 25537193 25542428 Pvu6g1468 6 25537193 25542428 ECH