Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1455 ATGGGCAATGTGAATGGGAGAGACGATGTCAACGGTACTCCCTCTGAGACCGAAGGAGAAGAAGAAGACGACGAACCTGCTGCTGCTGCTACTACTCACGGTGTCGTCGATTGCATGTCCGCCAACCCTGGCTATCGTGCGCCTTCCGATATGATGGGTCATTCTCCTCCTGCTAGCCCTAGAGCCACCCAATCTCCCTTCATGTTCACCCCACAAGTTCCTGTGGTTCCACTACAAAGACCTGATGAGATGCATACTCCAAGCCCTTCCTGGATGCAGACTACGTCAGGGTATGAGGATATGTACAGTGAATTAGGAATTCCAACGATGATTACTTGGAGTTATGATGGGAAAGAAGTGGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGTCCTTACAGAGATCAGGGAAGGATTTCACAATAATGAAAGTGTTGCCCTCTGGTGTATACCAATTTAGATTTGTTGTGGATGGCCAGTGGAGGTATGCACCTGACTTGCCTTGGGCTCAAGATGATGCGGGTAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAGGACATCGGAAGCATTTCTAGTTTTGAACCTCCTAAATCCCCAGACTCTAGTTATAACAACCAACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCATATTTGCAAATGACGCTTCTTAATATTCCGTCAACAAATATGGAAATCCAACCTCTTACAGCTAGACCTCAGCATGTAGTGCTCAATCATCTTTACATGCAGAAAGGGAAGGGTAGCCCTTCAGTGGTTGCACTTGGTACAACTCATCGGTTTCTAGCCAAATATGTGACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 885 0.461 MGNVNGRDDVNGTPSETEGEEEDDEPAAAATTHGVVDCMSANPGYRAPSDMMGHSPPASPRATQSPFMFTPQVPVVPLQRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWKTRMSLQRSGKDFTIMKVLPSGVYQFRFVVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNQQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEIQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFLAKYVTVVLYKSLQR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1455 294 SUPERFAMILY E set domains 107 192 IPR014756 -
Pvu6g1455 294 MobiDBLite consensus disorder prediction 1 67 - -
Pvu6g1455 294 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 294 IPR043554 -
Pvu6g1455 294 SMART AMPKBI_2 202 292 IPR006828 GO:0005515
Pvu6g1455 294 Gene3D - 195 292 - -
Pvu6g1455 294 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 220 290 IPR006828 GO:0005515
Pvu6g1455 294 Gene3D Immunoglobulins 102 189 IPR013783 -
Pvu6g1455 294 CDD E_set_AMPKbeta_like_N 108 184 - -
Pvu6g1455 294 SUPERFAMILY AMPKBI-like 189 291 IPR037256 -
Pvu6g1455 294 Pfam Glycogen recognition site of AMP-activated protein kinase 107 186 IPR032640 -
Pvu6g1455 294 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1455 Pvu-Chr6 25465139 25468158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1455 106 187 Protein tyrosine phosphatase (PTP) family AT3G01510 30.682 6.99e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1455 K07199 - gmx:100777497 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0899 3 14864679 14867841 Pvu6g1455 6 25465139 25468158 PCT