Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1453 ATGGCTGAGTCTGATAACGATTCAGGAGGGCAAGCCGGTAACACGAATGGAGGCAATGAATTCTCAGGGTGCAGAGAGCAAGACAGGTTCCTTCCCATAGCCAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGAGGCGAAGGAAACCGTGCAAGAGTGTGTGTCGGAGTTCATCAGCTTCATAACAGGTGAAGCATCTGATAAGTGCCAGAAGGAGAAGAGAAAAACTATCAACGGTGATGACCTACTGTGGGCCATGACCACACTGGGGTTTGAGGAGTATGTGGAGCCTCTCAAGATTTACCTGCACAAGTACAGGGAGATGGAGGGGGAGAAAACTGCTATAATGGGAAGGCCACTGGGTGGTGGTGGTGCTGGTGATCAGAGGGATGAGGCTTATGGCCATGCTCATGGCCATGGAGGTATGGTACCAAACTCTATGATGGTGATGATGGGGCATCAGGGACACGTGTATGGATCTGGGAGTGCTGGCTCAGCATCTTCTGCAAGAACTAGATAG 543 0.5157 MAESDNDSGGQAGNTNGGNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAIMGRPLGGGGAGDQRDEAYGHAHGHGGMVPNSMMVMMGHQGHVYGSGSAGSASSARTR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1453 180 MobiDBLite consensus disorder prediction 1 24 - -
Pvu6g1453 180 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Pvu6g1453 180 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Pvu6g1453 180 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Pvu6g1453 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 165 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu6g1453 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Pvu6g1453 180 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu6g1453 180 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 165 - -
Pvu6g1453 180 MobiDBLite consensus disorder prediction 1 22 - -
Pvu6g1453 180 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982
Pvu6g1453 180 Gene3D Histone, subunit A 19 141 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1453 Pvu-Chr6 25454625 25455472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1453 1 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.333 5.44e-73 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu6g1453 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1453 K08065 - gmx:100305641 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1453 6 25454625 25455472 Pvu6g1453 6 25454625 25455472 ECH
Pvu3g0901 3 14987814 14988990 Pvu6g1453 6 25454625 25455472 PCT