Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1451 ATGGACCTCTTCGCCGCCGATCACTTCCCCATCCCCGACCACGTCGCTCCATTTCCCGATTCCGGCGACCTCTTATTCCCGCCCGATCCCCTCTCCCACCGACACAACCCCCAGAAGCTCCGCCCTATCCGGTCTCTCCCTTCCGCCCTCAATGCCCATCCTCGTCCGCCCGATCCGATTGCCTCCGGGTCGGGTCACACCCCGAGCCACGAATCTGACTCGGCTTTGGATGCGGAGGAGGAAGATGAGGATGATGACAATTCATCAGCAAGTACTGAAGGAAATGGCCCTAGAAAGAGAAGGAGAAAGACGGTGAGAAAGCTTGAAGGTTTTGTGAAGGATTTGGTGACAAAGGTGATGGAGAAGCAAGAGCAGATGCACAAACAGTTGGTGGAAATCATAGAAAACAAGGAAAGGGAAAGGATTAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGAGGAAGAGGCTAGAGCCCAAGAAAAGTCTCGAAATTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCACGAAATTCAAATCCCCCAACCAGTAGAAGCATGCAACAAAAGAGAAGAGAATGAAGTTGAGGTGAATGCTCAAAAAGAATTTAATGGTGATCCCAGTAAGAGTAGATGGCCTGATGTTGAAGTACAATCACTTATCACAGTGAGAACTTCATTGGAGCACAAGTTCCGTTTCATGGGATCGAAAGGGTCAATATGGGAGGAGATATCTGAAGCAATGCATGGCTTGGGCTATAATCGGTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAGTACTATAAAAGGACAATAGGGAGTGGCAAGAAAAGGCGTCAAAATAGTAAAAGTTGCCCTTATTTTGATGAGTTGGACATTCTGTATAGAAACGGCCTCCTAAGTATTGGAAATGCCTTGAGCAATACCACTGATGCTCCCCAGATTGAAGAAAAGGAGTAG 990 0.4727 MDLFAADHFPIPDHVAPFPDSGDLLFPPDPLSHRHNPQKLRPIRSLPSALNAHPRPPDPIASGSGHTPSHESDSALDAEEEDEDDDNSSASTEGNGPRKRRRKTVRKLEGFVKDLVTKVMEKQEQMHKQLVEIIENKERERIKREEAWKNEEMERIRKEEEARAQEKSRNLALISFIQNLLGHEIQIPQPVEACNKREENEVEVNAQKEFNGDPSKSRWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMHGLGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKSCPYFDELDILYRNGLLSIGNALSNTTDAPQIEEKE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1451 329 CDD GT1 217 281 - -
Pvu6g1451 329 ProSiteProfiles Myb-like domain profile. 211 275 IPR001005 -
Pvu6g1451 329 Coils Coil 120 170 - -
Pvu6g1451 329 Gene3D - 219 280 - -
Pvu6g1451 329 PANTHER - 69 327 - -
Pvu6g1451 329 MobiDBLite consensus disorder prediction 75 89 - -
Pvu6g1451 329 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 69 327 - -
Pvu6g1451 329 MobiDBLite consensus disorder prediction 20 104 - -
Pvu6g1451 329 Pfam Myb/SANT-like DNA-binding domain 217 302 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1451 Pvu-Chr6 25443639 25446008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1451 99 307 Trihelix Transcription Factor Family AT5G47660 45.536 2.73e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu6g1451 Myb_DNA-bind_4 9.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1451 - - pvu:PHAVU_006G139200g 628.632