Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1401 ATGTCTGAATACCATGGTGATGAAATGGACTATGCGGCAGATGATAATGAAATGGCAGAGGTAGAAGATGATATGTATTTTCGCGGCATAGCATTTGGTGAATCAGATTCAGATGATGATGACGACTATGAATATGACCCTTTGGAAGACCGAATAACAGATACCACTGCTGCAGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGACCATTAGTCGTGAGAAATATAGACAAACCAGACTAGAGCAGTACAAGAATTATGAAAATATACCACAATCTGGGGAATTGTCAGAGAAGGAATGCAAAGCAACAGATAAAGGGGGAAATTATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAATTGAGGAATTTAGTTTGGTCAACATCAAAACATGATGTATATCTTGTTTCAAATTACTCAATTATTCACTGGTCTTCATTAAGTTCTAAGAGATCTGAAGTTTTGAATGTATCAGGCCATGTAGCTCCCTGTGAGAAACATCCTGGAAGCCTCTTGGAAGGTTTTACTCAGACACAAATTAGTACACTGTCAGTACGGGATAACTTGTTGATTGCTGGAGGTTTTCAAGGAGAACTTATTTGCAAGTACTTAGACCGGCCTGGAGTTAGTTTTTGTACTCGAACTACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGACCATCCAAGTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTTTGATATGGAGAGGTTTCAGCTTTCAAAGCATTTCTCCTTTCCTTGGCCAGTAAATCATACTTCATTAAGCCCTGATGGGAAACTACTTGCAATTGTTGGAGACAACCCAGAAGCACTACTGGTGGATTCTCAAACAGGAAAGACTATCACACCTTTGCATGGACACTTAGATTTCTCATTTGCATCCGCATGGCATCCTAATGGGCAAATATTTGCTACCGGGAACCAAGACAAAACATGTCGTGTTTGGGATGTTCGGAACTTGTCAAAATCTGTTGCTGTTCTTAAGGGCAACCTTGGAGCTATTCGTTCAATACGTTTCACGTCCGATGGTCAGTTCATGGCGACGGCAGAGCCAGCCGACTTCGTGCATGTTTACGACGCAAAGCATGGGTTTGAAAAGGAGCAGGAGATTGATTTTTTTGGGGAGATCTCTGGTGTATCCTTTAGCCCTGACACAGAATCACTTTTTATTGGTGTTTGGGACCGCACCTATGGAAGCCTTCTACAGCTGAATCGACGAAGAAACTACATGTATCTGGACTGCTTGTAA 1341 0.4146 MSEYHGDEMDYAADDNEMAEVEDDMYFRGIAFGESDSDDDDDYEYDPLEDRITDTTAAEARRGKDIQGIPWDRLTISREKYRQTRLEQYKNYENIPQSGELSEKECKATDKGGNYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSNYSIIHWSSLSSKRSEVLNVSGHVAPCEKHPGSLLEGFTQTQISTLSVRDNLLIAGGFQGELICKYLDRPGVSFCTRTTYEDNAITNAVEIYDHPSGAVHFMASNNDSGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLAIVGDNPEALLVDSQTGKTITPLHGHLDFSFASAWHPNGQIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGQFMATAEPADFVHVYDAKHGFEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQLNRRRNYMYLDCL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1401 446 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 446 - -
Pvu6g1401 446 SUPERFAMILY WD40 repeat-like 200 427 IPR036322 GO:0005515
Pvu6g1401 446 SMART WD40_4 308 347 IPR001680 GO:0005515
Pvu6g1401 446 SMART WD40_4 267 305 IPR001680 GO:0005515
Pvu6g1401 446 SMART WD40_4 351 390 IPR001680 GO:0005515
Pvu6g1401 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 350 - -
Pvu6g1401 446 Pfam WD domain, G-beta repeat 310 347 IPR001680 GO:0005515
Pvu6g1401 446 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 9 446 - -
Pvu6g1401 446 Gene3D - 228 441 IPR015943 GO:0005515
Pvu6g1401 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1401 Pvu-Chr6 24899269 24904081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1401 303 427 Miscellaneous Gene Families AT5G08390 28.000 1.09e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1401 - - gmx:100788712 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1401 6 24899269 24904081 Pvu6g1401 6 24899269 24904081 ECH