Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1383 ATGGAAGAGACCTCTCTCTGCTGTGAACAATTGGCGGATGGGGAATGCATTGAGGTTCAGAAAGACGAAGATGGCGCGCTGATTGTATTGGATTGTCAGAATGGTTTTCCTGAGGGGAGAAAGGAATTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCATACGATGATGCTTACAATTATTATATTTGCTATGCCAAGGAGGTGGGGTTTCGTGTACGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCAGAGAGAAGTATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAGAGAATAAAGGATGTTAATCATTTGAGGAAGGAGACCAGAACTGGTTGTCCTGCAATGATAAGGATGAGATTAGTGGAGTCACAGAGATGGCGGGTGCTTGAAGTTATGCTTGAACATAACCACATGTTGGGTGCTAAACACAGATTGGTTAAGAAGATGGGAACTGGGATGAAGAGGAAGTCGTTGCCTAGTTCTGATGCTGAGGGGCAGACGATTAAGTTGTACCGTGCACTTGTGATTGATGCGGGAGGTGATGGAATTTCAAACTCCAGTGCGAGAGAGGAGAGAAGTTTCTGTGAGTTTTCTAATAAGTTGAACCTTAGAAAAGGTGACACACAGGCCATTTATAATTTCCTCTGCCGAATGCAATTGACTAATCCAAACTTCTTTTACTTGATGGATTTCAATGACGAAGGGCACTTGAGGAATGCATTTTGGGTTGATGCTAGGTCCAGGGCTGCATGTGGTTATTTTGGCGATGTAATTTATTTTGACAACACTTATTTGTCAAACAAATTTGAAATCCAGCTGGTGACTTTTGTTGGAATAAATCACCATGGTCATTCGGTGTTATTAGGATGTGGCCTGCTTGCTAGTGAAACTACAGAATCTTATGTATGGTTGTTTAGGACATGGGTTAAATGTATGTCAGGATGTTCTCCCCAAACTATTATTACCGATAGATGCAAGGCTTTGCAGAGAGCAATTGTGGAGGTTTTTCCTAGATGTCGTCATTGTTTTGGCTTGTCATTAATTATGAAAAAATTACCAGAAAAATTGGGAGGTTTGCACAACTATGATGCACTCAGGAAAGCACTGATTAAAGCAGTTTATGAAACATTGAAAGTGATTGAGTTTGAAGCAGCATGGGGATTTATGATTCAACACTTTGGAGTTAGTGATCATGAGTGGCTTCGTTCTCTGTATGAAGATCGAGTTCATTGGGCTCCGGTATTTTTGAAGGACACATTTTTTGCTGGAATGTCTGCAGCTCGGCCTGGTGAGAACATGACTCCTTTTTTTGATAGATACGTGCACAAACAGACTCCTCTGAAGGAGTTTCTTGATAAGTATGAGTTAGCTCTTCACAAGAAGCACAAGGAAGAGTCTTTTGCAGATATTGAATCAAGGAGCTCAAGCCCCTTGCTGAAAACTAGATGTTCCTTTGAATTGCAGCTCTCCAGATTGTACACTAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTATATTCTTGTTTTGGTACAACGCAGTTACATGTGGATGGTCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACAGACGGGAGATTCGTGACTTTGAAGTTTTGTACAGTAGGACAGTAGGTGAAGTTCGTTGCATCTGTAGTTGCTTTAATTTTTATGGATATCTTTGTCGACACGCACTGTGTGTGCTCAATTTTAATGGGGTTGAAGAGATACCTCACAGATACATTCTTTCGCGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCTCTGGTACTGCTGATGATACTGACCGCATTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGGATACTTTCTCTAGATCATTACAATGTAGCGTTACAATCTTTAGAAGACTCACTCAGTAAGGTTCATGATGTAGAGCAGAGACATGGGTAA 2001 0.4138 MEETSLCCEQLADGECIEVQKDEDGALIVLDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKHRLVKKMGTGMKRKSLPSSDAEGQTIKLYRALVIDAGGDGISNSSAREERSFCEFSNKLNLRKGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNAFWVDARSRAACGYFGDVIYFDNTYLSNKFEIQLVTFVGINHHGHSVLLGCGLLASETTESYVWLFRTWVKCMSGCSPQTIITDRCKALQRAIVEVFPRCRHCFGLSLIMKKLPEKLGGLHNYDALRKALIKAVYETLKVIEFEAAWGFMIQHFGVSDHEWLRSLYEDRVHWAPVFLKDTFFAGMSAARPGENMTPFFDRYVHKQTPLKEFLDKYELALHKKHKEESFADIESRSSSPLLKTRCSFELQLSRLYTREMFMKFQLEVEEVYSCFGTTQLHVDGPIIIFLVKERVLIEGNRREIRDFEVLYSRTVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPHRYILSRWKKDYKRLYVPDHSSGTADDTDRIQWSNQLFRSALQVVEEGILSLDHYNVALQSLEDSLSKVHDVEQRHG* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1383 666 Pfam SWIM zinc finger 535 580 IPR007527 GO:0008270
Pvu6g1383 666 ProSiteProfiles Zinc finger SWIM-type profile. 548 584 IPR007527 GO:0008270
Pvu6g1383 666 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Pvu6g1383 666 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 662 IPR031052 GO:0006355
Pvu6g1383 666 SMART 26again6 559 586 IPR006564 GO:0008270
Pvu6g1383 666 Pfam MULE transposase domain 261 355 IPR018289 -
Pvu6g1383 666 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 23 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1383 Pvu-Chr6 24759223 24761766 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu6g1383 MULE 7.6e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1383 K17604 - gmx:100796448 1264.21