Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1382 ATGACTGACGATACCATGTGTTCTCCAAGCGACAAGGACTTGTCGCTGAGTCCTAATCTTGATATCACGATAGATGATAGTTCTCCAAACAGTGAGCAACTTCTTGACATAGTGGACGAGGGCAACGAGCTTGACAATGAATGTGGACAATTGTTTGATATTGATGGAAGTGAACGTGAAAATGGGAGGGATGAAACCACAGTAGTTGATAGTCATAGTGGAGAATCTCAAGGAAAAGACTGCCCCCCACCAGTTGTGGGAATGGAGTTTGATACTTACGATGATGCATACAACTATTACAATACTTATGCCAAGGAAATTGGATTTGCTACTCGAGTTAAATCTTCATGGACGAAACGTAACAGCAAAGAGAAGCGTGGTGCGGTTCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGAAGCAAATAGTCACCGGAAAGAAACAAGAACGGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAGAGTCGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCACAAAACTCTAAATCACATAAGAGGATGGACAGTAGGGCCAAAAGAAAAGTTGAGCCAACTCTAGATGTTGAAGTAAGAACAATCAAGTTATATCGAATGCCTGTTGTAGATGCATCAGGTTATGGAAGCTCAAATTCCACTGAAGGTGGAACTAGCAACCACATTAATTGTTCCAAGCGTTTGAAACTTAAAAGGGGTGATCTGGAGCTTATTTCAAATTACTTCTGCCGCATTCAATTGACTAATCCTAACTTTTTCTATGTGATGGATCTGAATGATGATGGACAGCTGAGGAATGTATTTTGGATTGAATCTAGATCTAGGGCTGCCTATAGTTATTTTGGTGATGTGGTTGCATTTGACTCAACGTGTTTGTCAAACAACTATGAGATTCCTCTTGTTGCATTTGTTGGTGTTAATCACCATGGAAAATCTGTTTTGCTAGGATGTGGTCTACTTGCAGATGAGACATTTGAAACATATATTTGGTTGTTTAGGGCATGGCTTACATGTATGACTGGTCGCCCTCCTCAAACTATGATCACAAACAAGTGTAAGGCCTTGCAAAGTGCAATTGCAGAAGTTTTCCCGAGAGCTCACCATAGAATTTGTCTATCGCAAGTCATGCAGAGCATTCTTGGGTGTTTTGTGCAGTTTCAGGAGTACGAGGCATTTCAAATTGCGCTTACTAAAGTCATATATGACTCTAAAACAGTAGATGAGTTTGAAAGGGCTTGGGATGATCTAACCCAGCATTTTGGAATAAGAAATCACGAAAAGATCCTAACCTTGCATGAGGAACGAGAGCATTGGGCTCCAGTGTACTCCAAAGACACATTTTTTGCTGGAATATCTGATTATGAAAAGGGTGAGTCTGTGGTTCCCTTTTTTAAGGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAGCAAAAAAAACATAAAACCGAAGTTCTTGATGATTTTGAGTCATGCGACTTGAGCTCATTACTGAAGACAAGATGCTACTACGAGTTGCAAATCTCTAAATTGTACACAAATGCTGTATTTAGGAAGTTCCAAGATGAGGTGGTGATGATGCCCTCTTGTTTCAGCATCACGCAGACTCAAACTAGTGGTTCCGTAGTGACCTACATGGTAAAAGAGCGCGAAGGGGAAGACCCTGCAACAGATGCTAGGCATTTTGAAGTCATATATGATAAAGGTGGAACAGAAGTACGCTGCATTTGTAGTTGCTTTAACTTCAAGGGCTACCTGTGCAGACATGCCTTGTATATCCTTAATTACAATGGTGTGGAGGAAATTCCATGTCAATACATTTTGTCAAGATGGAGGAAAGATTTTAAGCGTTTGTATGTACCTCATCTCAGTGCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCCATGCAAGTTGTTGAAGAAGGGATGATATCCCAAGATCATTATATGGTTTCTTGGCAAGCATTTAAAGAGTCTCTGAATAAGGTTCGCCTTGTAGCAGACAAGATTGAATAA 2124 0.4007 MTDDTMCSPSDKDLSLSPNLDITIDDSSPNSEQLLDIVDEGNELDNECGQLFDIDGSERENGRDETTVVDSHSGESQGKDCPPPVVGMEFDTYDDAYNYYNTYAKEIGFATRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSRAKRKVEPTLDVEVRTIKLYRMPVVDASGYGSSNSTEGGTSNHINCSKRLKLKRGDLELISNYFCRIQLTNPNFFYVMDLNDDGQLRNVFWIESRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHGKSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTMITNKCKALQSAIAEVFPRAHHRICLSQVMQSILGCFVQFQEYEAFQIALTKVIYDSKTVDEFERAWDDLTQHFGIRNHEKILTLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEVLDDFESCDLSSLLKTRCYYELQISKLYTNAVFRKFQDEVVMMPSCFSITQTQTSGSVVTYMVKEREGEDPATDARHFEVIYDKGGTEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSADNVDISNPVQCFDHLYKRAMQVVEEGMISQDHYMVSWQAFKESLNKVRLVADKIE* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1382 707 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 32 704 - -
Pvu6g1382 707 MobiDBLite consensus disorder prediction 179 202 - -
Pvu6g1382 707 MobiDBLite consensus disorder prediction 53 83 - -
Pvu6g1382 707 ProSiteProfiles Zinc finger SWIM-type profile. 589 625 IPR007527 GO:0008270
Pvu6g1382 707 MobiDBLite consensus disorder prediction 53 70 - -
Pvu6g1382 707 SMART 26again6 600 627 IPR006564 GO:0008270
Pvu6g1382 707 Pfam MULE transposase domain 303 396 IPR018289 -
Pvu6g1382 707 Pfam FAR1 DNA-binding domain 98 182 IPR004330 -
Pvu6g1382 707 MobiDBLite consensus disorder prediction 1 29 - -
Pvu6g1382 707 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 704 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1382 Pvu-Chr6 24753933 24757953 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu6g1382 MULE 1.4e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1382 K17604 - gmx:100796448 1356.66