Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1376 ATGGGGGATCAGGGTGTTTTAGGTGCTAATGTTGGAAGAGAGGAGGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGACGAGGAAGCGTGGAAAGAGACTGAGGAGGCTGTGGTGGAAGGGTTGAAGGACGAGCTTGATGAATTTTCGGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGGTTGAAAAATCAAGTTCTGGGTTTTCTGGAATTGGAGTTGTCATGGAAAGGTCACCAGGGCTTCCTGCTATAAGGGTGCAGAAAAAACTTGACTTTTGTGCGGAGGAATCTGTGGTTGACTATTTGGCACTCTTGGATGGCTTGCTGGAAGCTGAGCGGAAAAAGATCCGCAGGGTTTATGCTTTTACAGATTCTGAGTCGTTGCATGATCAGATAACATTTGGGGGAAAAATGGACATGCCTCTTTTGATGGCATTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTCGTTTTAAAGCTTATACCCTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGCCTTGTCACATTCCCCGTAAATGGTGAGAGATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCTAATTATGATTACCCTGAAATGTTCACACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCATCTCAAGTTCCTATAAGATGCCCTCAACCAGGGTGCAAGTATTGCATCTCTGCAACTGAGTGCCGGTCTTTTCTTCCATTCACCTCCTTTGAATCACTGGAGAAAGCCCTTTCCCAAGCAAATATTGACCATTCAGATAGAATTTATTGTCCATTTCCAAATTGTTCCGTTCTCCTTGATTCTCATGAATGCTTATCAGCTACTGCAAGTTCATCTAGTCAGTCTGACAATTCCTGTATCGAGTGTCCTGTTTGTAAGAGGTTTATCTGTGTGGAGTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATTCCAGAATCTGCCAGAGGAGGAGAGGGATGCTTCTGACATTACCTTGCACCGTCTTGCTCAAAATAAGAGGTGGAAGCGTTGTCAGCAATGTCATACAATGATTGAACTTACTCAAGGCTGTTACCACATGTCGTGCTGGTGTGGTCACCAGTTCTGCTACTCTTGTGGTGCGGAGTACCGAGAAGGGCAACAAACATGCCAGTGTGCATATTGGGATGAAAATAACTCAGAAGACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAACTCTCTCTCCATGATCGTGGATGCATACTCAGACCAGGAACGATCCCAGCTTGCGCTTATTCAGAGGTTTCTAGCCGGGGGTTTCAGTCTCAGTGACCACAATCCTTACCAGTCTCCTCCTCGCTGTACAGATTCCTATGTAGACCCCATGAAGGATCTGCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTCATAAGTGACAACTACTATGAAGATTACATTCAATGA 1545 0.444 MGDQGVLGANVGREEEEDEFCSCCGDEDEEAWKETEEAVVEGLKDELDEFSVKMFFKGLSMAGVEKSSSGFSGIGVVMERSPGLPAIRVQKKLDFCAEESVVDYLALLDGLLEAERKKIRRVYAFTDSESLHDQITFGGKMDMPLLMALRERILELANNFEDFVLKLIPSTDLEQPLHLAKVAIGLVTFPVNGERLLKNCSICCDDKPVLIMITLKCSHTFCSHCLRAYADGKVQSSQVPIRCPQPGCKYCISATECRSFLPFTSFESLEKALSQANIDHSDRIYCPFPNCSVLLDSHECLSATASSSSQSDNSCIECPVCKRFICVECKVPWHSSMSCVEFQNLPEEERDASDITLHRLAQNKRWKRCQQCHTMIELTQGCYHMSCWCGHQFCYSCGAEYREGQQTCQCAYWDENNSEDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1376 514 Coils Coil 33 53 - -
Pvu6g1376 514 ProSiteProfiles TRIAD supradomain profile. 196 414 IPR044066 -
Pvu6g1376 514 SMART ring_2 369 410 IPR001841 -
Pvu6g1376 514 SMART ring_2 200 251 IPR001841 -
Pvu6g1376 514 Gene3D - 337 462 - -
Pvu6g1376 514 SUPERFAMILY RING/U-box 199 276 - -
Pvu6g1376 514 Pfam Reverse transcriptase-like 63 169 IPR002156 GO:0003676|GO:0004523
Pvu6g1376 514 Pfam IBR domain, a half RING-finger domain 359 408 IPR002867 -
Pvu6g1376 514 Pfam IBR domain, a half RING-finger domain 275 339 IPR002867 -
Pvu6g1376 514 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Pvu6g1376 514 SUPERFAMILY RING/U-box 352 416 - -
Pvu6g1376 514 Gene3D - 57 186 IPR036397 GO:0003676
Pvu6g1376 514 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 513 IPR031127 GO:0004842|GO:0016567
Pvu6g1376 514 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Pvu6g1376 514 SMART ibrneu5 267 339 IPR002867 -
Pvu6g1376 514 SMART ibrneu5 349 408 IPR002867 -
Pvu6g1376 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 280 IPR013083 -
Pvu6g1376 514 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1376 Pvu-Chr6 24689569 24695218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1376 51 399 C3H Transcription Factor Family AT2G19610 25.070 6.58e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1376 - - gmx:100783040 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1376 6 24689569 24695218 Pvu6g1376 6 24689569 24695218 ECH