Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1374 ATGGAAACCGGTGCTGCCGGTACCCAAGCCCAACCAAGCGGTTACACCGGAAGAGAAATTCCGCCACCGCAACTGCCTGAGGAACCGAATCTGCGGCCAGAATGCCGACGATCAAGTGGAACTGAGCCGGACCTCATTCTGCAACCTGAATGGCGCCGTCCAAGGCCAATCGATCCTCCTTCCGAACCTTCCAACCGTGGCGGCGAAGAGGAAATTCTACTCCAACCACAATGGAGGCGCTCGAAGCCAACCGCGAGCGCGAGTGCGAGTACTAGTGTTTGGGAACCTGAATGGAGACGATCGAGAACAGGTTCAACGGCATTTCCATGGAACCAGAATTACAGTGTTCGCAAACCTAGTGCGTCGAGTTCCGGTGGCGTTGAAAGACGCGGTGACCCTAACGACCTTTGGCGAGCTCTTCCGGCTGCAGATTCTGTCATTCCCAAGCTGGAAAAACTTCAAATATCAAAACAGTTTCCTACATCAAGTGAAAAAGAGGATAAAATATCACCTATTCAGAGACCTGATAATGGTGGCACGATAAAAATTCTAACTAGCAGACTCCGTGTGAATCATTTCCCTGTTAAGTTTGATCCAGAACGTACAATAATGCATTATAGTGTTGGTGTCAAGCCTAAGGTTTCTTCAAAATTTGGGCAGCCTCAGAGATTATCGAAGTCTGATCTATCCATGATCAGAGAGAAACTATCATTTCATAGTGTTACCTTAACTCTTGTTAATAAACTCAGGCTTTGCAAGTTAATGGACTATCTTAGTGGGCATAATCTCTCCATTCCTAGGGATATTTTACAGTGTATGGATGTGGTGGTGAAAGAGAATCCTGCTAGGCGAACTGTTTCTGTAGGAGGACGCTACTATCCCACAAATCCTCCTGTAGTGATGAAGGATCTTCACCATGGGATAATTGCTGTTGGGGGATTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTTTTGGCTTTTCGGAAGGGAATGCCAGTCTTGGATTTCTTACATGAGTGTATCGATAACTTTAAATTGGATGAATTTGAAAAATTTAGGAAATGTGTTGAGGGCGCACTTGTTGGATTGAAAGTCAATGTGACTCATCGTAAATGCAATCGGAAATACATTATTTCAAGATTAACTCCTATGATTACAAGGTATGTCACTTTTCCCATTGACAATACCGGTGAATGGAATCGCCCAAAGGATGTTAGTCTTCTTACCTTTTTTAAAGACAAATATGGCAAGGAAATTATGTACAAAGATATTCCTTGTTTAGATTTAGGGAAAGACAAGAAGAACTATGTACCCATGGAATTCTGTGTTCTGGTTGAGGGCCAAAGATATCCCAGAGACCGTCTGGATAGTATTTCTGCAAATACATTGAAAACAATGTCACTAGCTCACCCAAATGAGAGGGAGGGTGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGCGGTGGATTTACTCAAAATTTTGGAATGAATGTCAAGACAACTATGACAACTATTGTAGCACGTGTACTTGGTCCTCCAGAATTAAAGTTAGGTGATCCAAATGGAAAGATCATTAAATTAACAGTGGATCTGGAAAAATGTCACTGGAATCTTGCTGGAAGGTCAATGGTGGAAGGTAAACCAGTTGAGAATTGGGGCATTATTGATTTCACTAGTTTTGGGCCATCCAAGTACAAATTAAGAGGCAAGGATTTCATTCAAAAGCTTATAGGCAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCGTGTTATAATTTGCTATCTGAATTACTTGAGAAAATTAAGAACATTTGTAAATATAACCACGTACACCTGCAATTTCTTCTGTGTGTAATGGCTAAAAAAAGTCCTGGTTACAAGTACCTGAAATGGATTTCTGAGACCAAACTTGGGATAGTGACACAATGCTGCTTGTCTAATGGTGCTAATGAAGCAGAGGACAAATTTTATACTAATCTGGCTCTCAAGATCAATGCCAAACTTGGAGGCAGTAACGTGGAGCTGAGTAATGGGCTCCCTTACTTTGTGGGTGAAGAACATGTGATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTCGCTACTGTTAACTGGCCTGCTGCAAATCGTTATGCAGCACGTGTATGCCCACAATACAATCGAATTGAGAAAATATTGAGCTTTGGAGATGTTTGCCTTGAGCTTGTTTCATGCTATAGGAGGATGAATGGAGTTAGGCCTGAAAGAATTGTTATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAACGAAGAACTGCTTGATTTGAAGAGAGTATTTCAAAGAGTAGACTACTTTCCAACAATCACTCTAATTGTAGCACAAAAACGACATCAAACTCGATTTTTCCCAGAGGGCTGGAGGGATGGATCTTCTAGTGGCAATATTTTACCAGGAACAGTTGTGGACACAAAAGTTATACATCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACCATGGAAACCTTGGTACAAGCAAGCCTACTCATTACCATGTTTTATGGGACGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTCATATACCATATGTGCTTCACCTTTGCCAAGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAACTCAACAAAAGATGCTTCCTCACTTTCACGAACCACCTCATTTGAACAAGGATTTTACTCACTGCATGCTGACCTGGAAAACATAATGTTCTTTATCTAA 2940 0.418 METGAAGTQAQPSGYTGREIPPPQLPEEPNLRPECRRSSGTEPDLILQPEWRRPRPIDPPSEPSNRGGEEEILLQPQWRRSKPTASASASTSVWEPEWRRSRTGSTAFPWNQNYSVRKPSASSSGGVERRGDPNDLWRALPAADSVIPKLEKLQISKQFPTSSEKEDKISPIQRPDNGGTIKILTSRLRVNHFPVKFDPERTIMHYSVGVKPKVSSKFGQPQRLSKSDLSMIREKLSFHSVTLTLVNKLRLCKLMDYLSGHNLSIPRDILQCMDVVVKENPARRTVSVGGRYYPTNPPVVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKGMPVLDFLHECIDNFKLDEFEKFRKCVEGALVGLKVNVTHRKCNRKYIISRLTPMITRYVTFPIDNTGEWNRPKDVSLLTFFKDKYGKEIMYKDIPCLDLGKDKKNYVPMEFCVLVEGQRYPRDRLDSISANTLKTMSLAHPNEREGAIHKMVQSSDGPCSGGFTQNFGMNVKTTMTTIVARVLGPPELKLGDPNGKIIKLTVDLEKCHWNLAGRSMVEGKPVENWGIIDFTSFGPSKYKLRGKDFIQKLIGKYKKLGIYMQEPIWYEESSMKILACYNLLSELLEKIKNICKYNHVHLQFLLCVMAKKSPGYKYLKWISETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYFVGEEHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARVCPQYNRIEKILSFGDVCLELVSCYRRMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRVFQRVDYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYHGNLGTSKPTHYHVLWDEHKFTSDELQKLIYHMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPNSTKDASSLSRTTSFEQGFYSLHADLENIMFFI* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1374 979 Gene3D - 706 979 IPR036397 GO:0003676
Pvu6g1374 979 MobiDBLite consensus disorder prediction 1 15 - -
Pvu6g1374 979 SMART PAZ_2_a_3 340 472 IPR003100 GO:0005515
Pvu6g1374 979 MobiDBLite consensus disorder prediction 1 134 - -
Pvu6g1374 979 SUPERFAMILY PAZ domain 335 493 IPR036085 GO:0005515
Pvu6g1374 979 SMART DUF1785_2 286 339 IPR014811 -
Pvu6g1374 979 Pfam Argonaute linker 1 domain 290 338 IPR014811 -
Pvu6g1374 979 MobiDBLite consensus disorder prediction 79 122 - -
Pvu6g1374 979 Pfam Piwi domain 640 934 IPR003165 GO:0003676
Pvu6g1374 979 Gene3D paz domain 334 459 - -
Pvu6g1374 979 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 72 236 - -
Pvu6g1374 979 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 234 978 - -
Pvu6g1374 979 Pfam PAZ domain 344 470 IPR003100 GO:0005515
Pvu6g1374 979 ProSiteProfiles PAZ domain profile. 340 455 IPR003100 GO:0005515
Pvu6g1374 979 SMART Piwi_a_2 639 937 IPR003165 GO:0003676
Pvu6g1374 979 CDD PAZ_argonaute_like 340 454 - -
Pvu6g1374 979 ProSiteProfiles Piwi domain profile. 639 938 IPR003165 GO:0003676
Pvu6g1374 979 SUPERFAMILY Ribonuclease H-like 623 938 IPR012337 -
Pvu6g1374 979 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 234 978 - -
Pvu6g1374 979 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 72 236 - -
Pvu6g1374 979 CDD Piwi_ago-like 502 936 IPR045246 -
Pvu6g1374 979 Gene3D - 521 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1374 Pvu-Chr6 24674695 24679768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1374 241 938 Eukaryotic Initiation Factors Gene Family AT1G48410 38.399 6.82e-138 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1374 K11593 - gmx:100783571 1652.11