Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1371 ATGGCTTATTCAGCCGAACCCTCATCTTCTTTGAGCTTTACATCATCTTCCCATTTATCAAATGGCTCAGTTAGTCACAACATATGCTCTTCTTACGTCTCTGATCCTGGACCTAACCTTGAGGTTGTCAGTTTGAGCAAGCTTAGCTCCAACTTGGAGCAGCTTTTGATTGAATCTGATTGTGATTACAGTGATGCTGACATCATTGTGGAAGGAATTCCAGTTAGTGTTCATCGATGTGTTCTTGCCTCTAGAAGTAAGTTTTTCCATGAATTATTCAAGAGAGAGAAGGGGTCATCAGAAAAAGAAGGGAAATTGAAGTATAACATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTGGGCTATGTATATACTGCTAAACTCAAGCCCTCTCCAATGGAGGTGTCTACATGTGTTGACAATGTATGTGCTCATGATGCTTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCCCTTTTCCAGCGACGTCTACTTAACTTTATAGGAAAGGCTCTTGTGGAAGATGTCATTCCAATCCTTACTGTTGCTTTCCATTGTAAATCGAGTCAACTCATCACTCAATGTATTGATAGGGTGGCCAGATCAGACCTTGACCAGATTTCAGTTGACAAAGAGCTTCCCCATGAACTCTCAGGGAAAGTTAAATTGCTTCGCCATAACCCTCAGCAAGAAGTTGAAAATGATGCCTCTGCACTGGATGCTTTGTCTCTAAAACGAATCACTAGAATACACAAGGCACTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTAAATGAGTCAGAGATTACTTTAGATGAAGCCCATGCTCTCCATTATGCTGCTGCCTATTGTGACCCCAAGGTTGTCTCTGAGGTGCTTGGTTTGGGGCTGGCTAATGTCAATCTTCGGAATTCTCGGGGCTACTCGGTGCTTCATATTGCTGCCATGCGTAGAGAGCCCTCCATCATAGTATCCCTACTCACGAAAGGGGCTTGTGCATCAGATTTGACTTTTGACGGTCAGAGTGCTGTTAGTATTTGTAGAAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACAGAACAGGGAAAAGAAACAAACAAAGATCGGATATGCATCGATGTTCTTGAAAGAGAAATGCGGAGGAATCCACTTGCTGGGGATGCCTGTATCTCTTCCCATACTATGGCTGATGACCTCCACATGAAACTACTATACCTTGAAAACAGAGTGGCATTTGCAAGACTTTTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCGCATGCTGAGACAACATCTGAGTTTGCTGGTCTCTCTGCATCAAACCCAAAAATTTCAAATGGCAACTTGAGGGAGGTTGATCTCAATGAAACTCCCATAGTGCAAAATAAGAGACTTCTTTCTAGAATGGAAGCCCTTATGAAGACAGTGAAAATGGGGCGGCGCTACTTCCCACACTGCTCAGATGTGCTGGACAAGTTCATGGAGGATGACCTACCTGACTTGTTTTATCTTGAAAAGGGTACTCAAGAAGAGCAGAGAATCAAAAGAACACGGTTCATAGAGCTTAAAGATGATGTCCACAAGGCCTTCAGCAAGGACAAGACCGAGTTTAGCCGCTCTGGCATTTCATCTTCATCTTCCTCATCCTCCCTCAAAGATTCTGTTGTACATTACAAAGCTAGGAAAGTGTAA 1773 0.4281 MAYSAEPSSSLSFTSSSHLSNGSVSHNICSSYVSDPGPNLEVVSLSKLSSNLEQLLIESDCDYSDADIIVEGIPVSVHRCVLASRSKFFHELFKREKGSSEKEGKLKYNMSDLLPYGKVGYEAFLIFLGYVYTAKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFIGKALVEDVIPILTVAFHCKSSQLITQCIDRVARSDLDQISVDKELPHELSGKVKLLRHNPQQEVENDASALDALSLKRITRIHKALDSDDVELVKLLLNESEITLDEAHALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYSVLHIAAMRREPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPLAGDACISSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASNPKISNGNLREVDLNETPIVQNKRLLSRMEALMKTVKMGRRYFPHCSDVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFIELKDDVHKAFSKDKTEFSRSGISSSSSSSSLKDSVVHYKARKV* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1371 590 MobiDBLite consensus disorder prediction 559 590 - -
Pvu6g1371 590 Gene3D - 264 404 IPR036770 -
Pvu6g1371 590 SUPERFAMILY Ankyrin repeat 256 373 IPR036770 -
Pvu6g1371 590 SUPERFAMILY POZ domain 51 189 IPR011333 -
Pvu6g1371 590 Pfam NPR1/NIM1 like defence protein C terminal 372 576 IPR021094 -
Pvu6g1371 590 SMART BTB_4 64 190 IPR000210 GO:0005515
Pvu6g1371 590 MobiDBLite consensus disorder prediction 563 581 - -
Pvu6g1371 590 Gene3D Potassium Channel Kv1.1; Chain A 38 222 IPR011333 -
Pvu6g1371 590 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Pvu6g1371 590 SMART ANK_2a 296 326 IPR002110 GO:0005515
Pvu6g1371 590 SMART ANK_2a 330 362 IPR002110 GO:0005515
Pvu6g1371 590 SMART ANK_2a 267 295 IPR002110 GO:0005515
Pvu6g1371 590 CDD BTB_POZ_NPR_plant 47 190 - -
Pvu6g1371 590 Pfam BTB/POZ domain 62 179 IPR000210 GO:0005515
Pvu6g1371 590 PANTHER REGULATORY PROTEIN NPR3 10 577 IPR044292 GO:0009862|GO:2000022|GO:2000031
Pvu6g1371 590 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Pvu6g1371 590 PANTHER REGULATORY PROTEIN NPR3 10 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1371 Pvu-Chr6 24651522 24656292 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu6g1371 NPR1_like_C 8.1e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1371 K14508 - gmx:100217338 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1371 6 24651522 24656292 Pvu6g1371 6 24651522 24656292 ECH