Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1358 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGTGGCCTCGACACCGCTCCCTCCGCCGCCGCCGCTCCCTCCGGCCCGCTCGTCCAGCACGACTCCTCCGCTGCCGCTTCCGCCGTGTCCAACGGTGGTCCTCCAGCCCCAACCCCCTCCGGAACCGAACCCGCGGCCGTCAACGTCCCCGGGCGGCGGAGCTTCCGTCAGACGGTATGCCGGCACTGGTTGCGCAGCCTGTGCATGAAGGGCGACGCGTGTGGGTTTCTGCACCAGTACGACAAGGCGCGGATGCCTGTTTGCCGATTCTTCAGGCTCTATGGAGAGTGTCGAGAACAGGATTGCGTGTATAAACACACGAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCCAATGGGCCTGATTGCCGATATAGACATGCGAAATCTCCTGGTCCTCCACCTCCTGTTGAAGAGGTCCTTCAGAAGATCCAACATTTATATTCCTACAATTATAACTCATCAAACAAATTTTTCCAACAAAGGGGTTCTAGCTATACCCAACAAGCTGAAAAATCCCAGCTTCCTCAAGGAACTAATTCTACAAATCAAGGGGTGACTGGAAAACCATTACCAGCAGAGTCGGGAAATGCCCAGCCACAACAACAAGTTCAACAGTCTCAGCAGCAGCAGGTCAGCCAGAACCAAATACAAAATGTTGCTAATGGCCAGCCTAATCAAGCCAGTAGAGCTGCTACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACCCAAAGGAGCAATGAATCCAAACTGAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCTAGAATTGGCGGTTCTGTTGCTGGGGGTAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAACTTCTCGGTTAAATGGTTGAAGTTATGTGAACTGTCTTTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCTTCAATTGGAGAGCAACTGGCATCGTTGCTTTATCTTGAGCCGGATGGTGAACTTATGGCCGTTTCAGTTGCAGCCGAGTCAAAACGGGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGTGGAGAAAATCCAGATATTGTTCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGATGAGAGCTTTGGTCATGGTGTAGGGCCAGCTGGTCAAGGCAGGGGTAGGGGCAGAGGTATGATGTGGCCACCTCATATGCCTCTTCCACGTGGAGCCCGACCCATGCCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGTTGTCCTATGGGCCCGTTGCACCTGACGGTTTTGGTATGCCAGATCTTTTTAGTGTGGGGCCCCGTGCTTTTGCACCATACGGTCCCAGATTCTCTGGTGATTTTGGAGGTCCCCCAGCAGCCATGATGTTTCGTGGGCGACCTTCTCAGCCTGGGATGTTTCCAGGTGGTGGCTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTTATGGGGGGGATGGGGGTTGCAGGGGCAAATCCACCAAGAGGTGGTAGGCCGGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAACACAAACCGTCTTGCCAAAAGAGATCAAAGAACTACTGATAGAAATGATAGGTATGGCTCCGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCTGATGATGATATGCAGTATCAGCAAGGTTACAAAGCGAACCAGGATGATCATCCTGCTGTGAACAACTTCCGGAATGATGACAGTGAAAGTGAGGATGAAGCACCTAGAAGGTCAAGACATGGAGAGGGGAAAAAGAAAAGGCGAGGCCCAGAAGATGTTAATACAAACTATAATCATTAG 2094 0.4938 MEDSEGVLSFDFEGGLDTAPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPTPSGTEPAAVNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSSYTQQAEKSQLPQGTNSTNQGVTGKPLPAESGNAQPQQQVQQSQQQQVSQNQIQNVANGQPNQASRAATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEDESFGHGVGPAGQGRGRGRGMMWPPHMPLPRGARPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFSVGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQNTNRLAKRDQRTTDRNDRYGSGSEQGKSQDMLSQSGAPDDDMQYQQGYKANQDDHPAVNNFRNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1358 697 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Pvu6g1358 697 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 692 IPR045168 -
Pvu6g1358 697 MobiDBLite consensus disorder prediction 407 421 - -
Pvu6g1358 697 SUPERFAMILY CCCH zinc finger 67 98 IPR036855 GO:0046872
Pvu6g1358 697 MobiDBLite consensus disorder prediction 179 234 - -
Pvu6g1358 697 MobiDBLite consensus disorder prediction 622 657 - -
Pvu6g1358 697 MobiDBLite consensus disorder prediction 583 601 - -
Pvu6g1358 697 Gene3D ph1033 like domains 220 396 - -
Pvu6g1358 697 ProSiteProfiles YTH domain profile. 258 393 IPR007275 GO:0003723
Pvu6g1358 697 MobiDBLite consensus disorder prediction 432 450 - -
Pvu6g1358 697 Gene3D - 62 125 - -
Pvu6g1358 697 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Pvu6g1358 697 SMART c3hfinal6 67 93 IPR000571 GO:0046872
Pvu6g1358 697 SMART c3hfinal6 123 147 IPR000571 GO:0046872
Pvu6g1358 697 MobiDBLite consensus disorder prediction 573 697 - -
Pvu6g1358 697 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Pvu6g1358 697 MobiDBLite consensus disorder prediction 19 61 - -
Pvu6g1358 697 MobiDBLite consensus disorder prediction 658 691 - -
Pvu6g1358 697 MobiDBLite consensus disorder prediction 33 49 - -
Pvu6g1358 697 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 692 - -
Pvu6g1358 697 MobiDBLite consensus disorder prediction 607 621 - -
Pvu6g1358 697 MobiDBLite consensus disorder prediction 407 472 - -
Pvu6g1358 697 Pfam YT521-B-like domain 258 320 IPR007275 GO:0003723
Pvu6g1358 697 Pfam YT521-B-like domain 337 392 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1358 Pvu-Chr6 24478265 24492524 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu6g1358 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1358 K14404 - gmx:100802826 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1358 6 24478265 24492524 Pvu6g1358 6 24478265 24492524 ECH