Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1342 ATGGCGCTTTCTTTGCACAAGGACTCAGCCAACAACCAGATGGATTCAAGCAAGTATGTTAGGTACACACCTGAGCAGGTTGAGGCTTTGGAGAGGGTCTATGCCGAATGTCCCAAGCCAAGTTCTTTGCGGAGGCAGCAGCTCATCAGAGAGTGCCCCATCCTTTCCAATATTGAACCCAAACAAATCAAAGTTTGGTTTCAGAATAGAAGGTGTCGTGAGAAGCAGAGGAAGGAAGCTTCTCGGCTGCAGACAGTGAACAGAAAGCTGACTGCGATGAACAAACTGTTGATGGAAGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTTTACGAGAATGGATATATGAAGCAACAGATACAGACTGCCTCTGCTGGCACCACCACAGACAATAGCTGTGAGTCTGTCGTAATGAGTGGTCAGAATCAACAGCAAAACCCAACACCTCAGCATCCCAATAGGGATGCCAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTTGAACCCACTAAGGTTGCTGAGATTCTTAAAGATCGACAGTCGTGGTATCGTGACTGCCGATGCGTGGAAGTATTGAGTATAGTTCCCACAGGGAATGGGGGCACCATAGAGCTCATGTACATGCAGACATATGCGCCCACAACACTGGCAGCAGCGCGGGACTATTGGACACTGAGATACACGACAAGTTTGGAAGATGGAAGTCTCGTGATATGTGAGAGATCATTGACATCCTCAACTGGTGGCCCCACAGGCCCTCCTACTACAACCTTCATTAGAGCTGAAATGCTTCCCAGCGGTTATCTGATTAGACCCTGTGAGGGTGGTGGATCCATTATTCACATAGTGGATCATATTGATTTAGATATATGGAGTGTCCCTGAAGTACTGAGGCCCCTGTATGAATCATCAAAAATCTTGGCCCAGAAATTGACCATTGCTGCCTTACAACATATAAGACAGATAGCACAAGAATCGAGTGGAGAAATTCAGTATGGTGGTGGACGCCAGCCTGCTGTATTGAGAACATTTAGTCAGAGACTTTGCAGGGGATTTAATGATGCTGTGAATGGGTTTGTTGATGATGGGTGGTCGCTGATGGGTACTGACGGGGTGGAAGATGTGACTATAGCTATAAACTCTTCTCCAAACAAGTTTTTGGGGTCCAATTATAATGCTTCCATGTTCCCATCATTCGGAGGTGGGGTTTTGTGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCGCCTGCTTTACTTGTTCGTTTTTTGAGAGAGCATCGATCAGAATGGGCTGATTACGGGGTTGATGCATACTCTGCTGCATGCCTTAAAGCTAGTTCCTATGCAGTTCCCTGTGCAAGGCCTGGTGGCTTTCCCAGCAGCCAGGTCATTTTACCTCTTGCTCATACTATTGAGCATGAAGAGTTTCTGGAGGTGGTTCGCATAGAGGGTCATGCATTTTCTCCTGAAGATGTCACGTTGGCACGTGATATGTATCTATTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGACGAGTCCTTTGCAGATGATGCTCTGTTACTGCCATCTGGTTTTCGCGTCATTCCATTAGATCCTAAATCAGATGGTCCAGCAGCAACTCGTACATTAGATTTGGCATCAACAATGGAAGTAGGATCCGCTAATGCTCGTCCAGCCGGTGAAGCTGATTTGAATGGGTACAACCTGAGGTCGGTCCTTACTATTGCTTTCCAATTTACCTTCGAAAATCATACACGGGACAATGTTGCTGCAATGGCTCGCCAGTATGTGCGTAGTGTTGTTGGATCCGTTCAGAGAGTTGCCATGGCAATTGCTCCTTCCAGGCTTAGTACTCAACTGGGGCCAAAGTCACTTCCTGGTTCCCCAGAGGCCCTTACCTTAGCACGATGGATCAGTAGAAGCTACAGGATCTACACTGCCACAGAGCTTTTTAGATCTGAGTCCACAGCAGGTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCCGATGCAATCATGTGCTGCTCTGTGAAAACAAATGCATCTCCAGTGTTCACCTTTGCTAATCAAGCTGGGTTAGATATGCTTGAAACTACTCTAGTCGCACTTCAAGACATAATTCTTGATAAAGTTCTTGATGAATCTGGAAGGAAGATTCTTTGTTCTGAGTTCTCCAAGATAATGCAACAGGGTTTTGCTTATCTACCAGCTGGGATATGTGTATCAAGTATGAATCGGCCAGTGTCTTATGAGCAGGCCATTGCATGGAAAGTCCTCAATGATGATGATTCTAATCACTGCCTAGCCTTCATGTTTATGAGTTGGTCTTTTGTATGA 2544 0.4682 MALSLHKDSANNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIQTASAGTTTDNSCESVVMSGQNQQQNPTPQHPNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRQSWYRDCRCVEVLSIVPTGNGGTIELMYMQTYAPTTLAAARDYWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPTTTFIRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDIWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGTDGVEDVTIAINSSPNKFLGSNYNASMFPSFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASSYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVTLARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPAATRTLDLASTMEVGSANARPAGEADLNGYNLRSVLTIAFQFTFENHTRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQLGPKSLPGSPEALTLARWISRSYRIYTATELFRSESTAGGDAILKQLWHHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIILDKVLDESGRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMSWSFV* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1342 847 CDD homeodomain 18 78 IPR001356 GO:0003677
Pvu6g1342 847 Pfam MEKHLA domain 701 846 IPR013978 -
Pvu6g1342 847 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Pvu6g1342 847 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Pvu6g1342 847 SMART START_1 166 376 IPR002913 GO:0008289
Pvu6g1342 847 CDD bZIP 70 109 - -
Pvu6g1342 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 847 - -
Pvu6g1342 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 847 IPR044830 GO:0003700
Pvu6g1342 847 MobiDBLite consensus disorder prediction 128 157 - -
Pvu6g1342 847 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Pvu6g1342 847 Coils Coil 87 107 - -
Pvu6g1342 847 SMART HOX_1 15 81 IPR001356 GO:0003677
Pvu6g1342 847 Gene3D - 9 84 - -
Pvu6g1342 847 MobiDBLite consensus disorder prediction 128 160 - -
Pvu6g1342 847 SUPERFAMILY Bet v1-like 167 378 - -
Pvu6g1342 847 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Pvu6g1342 847 SUPERFAMILY Bet v1-like 414 601 - -
Pvu6g1342 847 Gene3D - 185 378 IPR023393 -
Pvu6g1342 847 CDD START_ArGLABRA2_like 161 377 - -
Pvu6g1342 847 Pfam START domain 167 374 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1342 Pvu-Chr6 24311622 24317626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1342 5 847 Homeobox Transcription Factor Family AT2G34710 79.787 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu6g1342 START 5.1e-51 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1342 6 24311622 24317626 Pvu6g1342 6 24311622 24317626 ECH