Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1338 ATGGAACTTGGAAGACCTGCCTCAAGTAGAAGAAAATTGAAAGATTTATTGCTTCAAAAAGATAATCGTTGTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGGGTGCACAGAAGCCTCGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAGTGGTCAGAGGATGAAATAGACGCAATGATGGAGGTTGGGGGAAATGCTTCTGCTAATTCAATTTATGAAGCTTATATTCCTGAAGGACTTACAAAACCTGAACCAGATGCTGGTCACGAGCAGCGTTCAAAGTTCATAAGGTCAAAATATGAATTTCAAGAATTTCTGAAACCGAGTTTGCGCATTGTATCTGGAAAAAGCAGTACAGGATCAAATTCTTCCAAAAGTCTTATCATCGATAGTTTTACAAGTGCTAGCAATACACAGAGACTGGAAGGTATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCGTATGTCATTTTGAGCCTTGGCCAGCAGACTGTCCAGACATCTGTAGCGAGGAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCAGAGCATTATGGACAGATGAAATTGAAAGTATTTGACTATGACACATTTTCCGCCGATGATATTATGGGAGATGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGACGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTTATTGAGGATAGCACAGTCAATATTGTTGATGGTAAGGTTAAACAAATGATGTCACTAAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCCAGTGGATTCCTCTTGATCAATAA 975 0.3877 MELGRPASSRRKLKDLLLQKDNRCCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSEDEIDAMMEVGGNASANSIYEAYIPEGLTKPEPDAGHEQRSKFIRSKYEFQEFLKPSLRIVSGKSSTGSNSSKSLIIDSFTSASNTQRLEGMVEFIGMLKVKVIKGTNLAIRDIKSSDPYVILSLGQQTVQTSVARSNLNPVWNEEYMLSVPEHYGQMKLKVFDYDTFSADDIMGDADIDLQSLITSAMAFGDAGMFDDMQIGKWLKSDDNALIEDSTVNIVDGKVKQMMSLKLQNVESGELDLELQWIPLDQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1338 324 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Pvu6g1338 324 Gene3D C2 domain 166 324 IPR035892 -
Pvu6g1338 324 ProSiteProfiles C2 domain profile. 149 265 IPR000008 -
Pvu6g1338 324 SMART C2_3c 169 264 IPR000008 -
Pvu6g1338 324 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 324 IPR044518 GO:0005096|GO:0005543
Pvu6g1338 324 CDD ArfGap 13 119 - -
Pvu6g1338 324 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Pvu6g1338 324 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Pvu6g1338 324 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Pvu6g1338 324 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 324 - -
Pvu6g1338 324 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Pvu6g1338 324 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Pvu6g1338 324 CDD C2_ArfGAP 167 311 - -
Pvu6g1338 324 Gene3D Arf GTPase activating protein 4 130 IPR038508 -
Pvu6g1338 324 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 124 IPR001164 GO:0005096
Pvu6g1338 324 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 164 261 IPR035892 -
Pvu6g1338 324 Pfam C2 domain 169 258 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1338 Pvu-Chr6 24279972 24285989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1338 3 324 C2H2 Transcription Factor Family AT4G21160 71.515 0.0 503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1338 6 24279972 24285989 Pvu6g1338 6 24279972 24285989 ECH