Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1322 ATGGATTTTGCCATGGGAGGTGCAGGTGGATCTGGGGATGATCACCATAATCACAATCACAATTACAGCCACAATAAGATCTCAAACAAAGGGAAAAAGGCCTACCATGGTCACAACGCTGATAGAACATCTAAGCTTGAAGAAATGTTTCGCAAGTGTCCACATCCAACTAAAAGCACAAGATGTCAAATAGCAGAAGAACTTGGACTTGATCCAAAACAAGTAAAGTTTTGGTTTCAGAATAAGAGAACTCAAATAAAGACTCAAACTGAAAGAACAAATAACAGTATCTTTCGTATTGAGAATGAAAGGATACGTAACGATAACCTCTTATTAAGAGAGGCATTCAAAAATATAATTTGTCCATCTTGTGGAGGTCCATCTAATGTCGATGAAAAACGTCAACGTTCTCTGGAACAACTTCGTCTTGAAAATGCTCGTCTTAGAGAAGAGCATGAGAAGGTGTCTAGTGCTCTAGAAAAGTACATGGATAAACCAATGTTAGACCTAAACATGGACTACACTCTTATGAGGGGATCTTCATCACAAGGTGGCTCAATGAGTGGTTCGTTTCAAGACGAAGATACCATGTCCAACCTTGGGAGAAAAATAACACAAGTGGAAAAAACAATGATGTCACAAACTGCAGTGGCTGCTAAGGAAGAATTAGTTAAGCTTTTGTGCACCAATGAGCCCATATGGGTCAAATCTTCAAATGATCAAAGATTTGTTCTTCATCTTGAAAGCTATGAACAATTCTTTCCAAGGATTAATCACTTCAAGAATTCCCAAGCCCGTGTAGAATCCTCAAAAGATTCACGAGTTGTGAGAATCAAGGCAACTGAATTAGTTGACATGTTTTTGAACTCGGAAAATTGGGAAAATCTTTTCTCAACAATTGTTACAAAAGCACGCACAATCGAAGTACTTGAAAATGGTTCAAATCGAAGTGGAGTTTTGTTGTTGATGAATGAAGAGATGCATGTTCTTTCACCTTTAGTTCCATCTCGAGAATTGTGCTTCCTTCGCTATTGTGAACAAATTGAAGCACATTCATGGGTGATAGTAGATGTTTCGGTTGACTGCACCAACGGGAACAACAATCCTAAGTATTGGAGGTTTCCCTCTGGATGCATGATTCATGAAATTTCAAATGAGTTATGCTGGATTTCTTGGGTTGAACATGTGGAAGTGGATGAGAAGATTGAAACGCATCAACTATACAAAGATATCGTTAATAACAATATTGCATATGGAGCAGAAAGATGGCTTTTGGAACTTCAAAGAATGTGTGCAAGATTTTCAAGTGTTGGAGTTGAATGCATACCTAATTACGACTCCTATGGAGTGATCACTACTCTTGGAGGAAGGAAAAATATGATGAGGTTTTCTGATCAAATGGTGAAAAACTTCTATGGAATTTTAAACATGGTGTCAACTAAGAGAGACTTTCCAGAACATTTAGCTGAGGAGAATATTAATATTAGGATCACTACTCGGAAATACACCAACTCAAGTCTATCAAATGGCATGATTATATTCATTGCTACCACTTCTTTTCGGCTTCCACTCCCCTCAGAAAATGTTTTTGACTTCTTCAGAGATCCAATAAAACGTGCTAAGTGGGATGTTATGTGTTATGAGAGTCCAGTACATGAAGTTGCACGTATATCCATTGGAACTCAACCTAGCAACTATATATCAATTATTCAGCCCGTCCACCGAAATGCAAATAACATGGCTATTATTCAAGAAAGTTGTATTGATCCTTTGGGATCATATGTTGTATATTCCCCCATCAATATATCTGACATAAAGATGGCAATAAATGGTGAAGAATCAACAACATTGGCAATTTTTCCATCAGGCATTGTCATCTCAAAGGATGAGCAATCTATTACAAATGCTTCTGCATGGAGCAGTGGAAGTGATGATACAAGAACACACAGTACTCTATTGACTGTGGCTTTCCAAATAATGATGAATGGTCCAACAACTATGATAGCAGAATCAAAGACGGTTGTTAACTCTCTCATGACCTCAACAATACAAAATATAAACCATGCTTTGATAAATGGTTCTAATTTAGAGTTTTAA 2097 0.3739 MDFAMGGAGGSGDDHHNHNHNYSHNKISNKGKKAYHGHNADRTSKLEEMFRKCPHPTKSTRCQIAEELGLDPKQVKFWFQNKRTQIKTQTERTNNSIFRIENERIRNDNLLLREAFKNIICPSCGGPSNVDEKRQRSLEQLRLENARLREEHEKVSSALEKYMDKPMLDLNMDYTLMRGSSSQGGSMSGSFQDEDTMSNLGRKITQVEKTMMSQTAVAAKEELVKLLCTNEPIWVKSSNDQRFVLHLESYEQFFPRINHFKNSQARVESSKDSRVVRIKATELVDMFLNSENWENLFSTIVTKARTIEVLENGSNRSGVLLLMNEEMHVLSPLVPSRELCFLRYCEQIEAHSWVIVDVSVDCTNGNNNPKYWRFPSGCMIHEISNELCWISWVEHVEVDEKIETHQLYKDIVNNNIAYGAERWLLELQRMCARFSSVGVECIPNYDSYGVITTLGGRKNMMRFSDQMVKNFYGILNMVSTKRDFPEHLAEENINIRITTRKYTNSSLSNGMIIFIATTSFRLPLPSENVFDFFRDPIKRAKWDVMCYESPVHEVARISIGTQPSNYISIIQPVHRNANNMAIIQESCIDPLGSYVVYSPINISDIKMAINGEESTTLAIFPSGIVISKDEQSITNASAWSSGSDDTRTHSTLLTVAFQIMMNGPTTMIAESKTVVNSLMTSTIQNINHALINGSNLEF* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1322 698 SMART START_1 214 433 IPR002913 GO:0008289
Pvu6g1322 698 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Pvu6g1322 698 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Pvu6g1322 698 CDD START_ArGLABRA2_like 209 432 - -
Pvu6g1322 698 SUPERFAMILY Bet v1-like 458 687 - -
Pvu6g1322 698 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 25 691 - -
Pvu6g1322 698 ProSiteProfiles START domain profile. 205 436 IPR002913 GO:0008289
Pvu6g1322 698 Gene3D - 214 432 IPR023393 -
Pvu6g1322 698 SUPERFAMILY Homeodomain-like 13 89 IPR009057 -
Pvu6g1322 698 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 691 IPR042160 -
Pvu6g1322 698 Pfam START domain 216 433 IPR002913 GO:0008289
Pvu6g1322 698 SMART HOX_1 30 93 IPR001356 GO:0003677
Pvu6g1322 698 Pfam Homeodomain 38 87 IPR001356 GO:0003677
Pvu6g1322 698 Coils Coil 131 165 - -
Pvu6g1322 698 SUPERFAMILY Bet v1-like 207 435 - -
Pvu6g1322 698 CDD homeodomain 32 89 IPR001356 GO:0003677
Pvu6g1322 698 MobiDBLite consensus disorder prediction 1 39 - -
Pvu6g1322 698 Gene3D - 16 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1322 Pvu-Chr6 24124407 24128853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1322 28 690 Homeobox Transcription Factor Family AT1G73360 39.628 3.77e-167 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu6g1322 START 6e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1322 K09338 - gmx:100794552 912.524