Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1321 ATGGCTTCTTCAATGGCCAGTGCTGGTGGGTCTGGTGACGATGAAGGTTCTCAAAACTTGAACAACGGAAGGAAAAACTCCTACAAACGTCTTACTTCTTCTCAAACAGCAAGACTTGAAAGATTCATCAAGGATTGCCCACACCCTGATGAGGCCCAACGGCGTCAGTTGGCTGCTGAGATTGGACTTGAGCCAAGGCAAATAAAGTTCTGGTTTCAGAATAAGAGGACCCAAATCAAGAATCAACACGAGAGAGCAGATAACACTGCTCTTCGAGTTGAGAATGATAGGATACACACAGAAAATGTTACAATGCAAGAGGCTTTGAAGAGTATGCTTTGCCCATCTTGTGGGGGACCACCGTGTCTTGAAGGAGATCGTGAACATTCTATCCATAATATGAAAATTGAAAATATTCACCTAAAGGAAGAGCATGAGAAGGTGTCTCGTCTTCTTTCGAGGTACTTGGAGAGCCAGATGTTACCACCTGATCAGTTCCAACAGGGTTTTTTCCCCATCATAGGATCAAGTTCAAATGCATCACATGGAAATCCAATGAACCAAGTAATTGGTGCAAGTTCAAGTCATGATCCAAATCTTGCTTTGCAAATGATGGATGGTGGCTATAACGTATATGCAAGTGAAGGCATAGAAAAAAACCTTATGGCTAAGGTTGCTGCTACCGCAATGGATGAGTTAATTAGGCTTCTTCGGATTAATGAGCCTTTTTGGATTAAGTCTTCCACTCAAGATGGGAAGCTCTACCTTCTGCTTGAAAACTATCAAAAAATGTTCCCAAAGACCAAACATTTCAAAGGGCCAAACGTGCGTATTGAAGCAACAAAAGAATCAGGAATAGTGAGCATCAATAGCCTTCAGCTTGTTGACATGTTTCTAGATTCGAACAAATGGGTTAATCTGTTCCCAACAATTGTCTCAAAAGCAGAAACACTGAAAGTACTTGAAAGAGGTTCGGCAGGAAACCGAAGTGGAGCCTTGCAGTTGATGTCCGAGCAAATGCATGTTCTTTCACCCTTTGTGCAACCTCGTGAATTTCAATTTCTTCGTTTCTGTCAACAAATTGAAGAAGGCCTGGTGATTGCAGATGTGTCATTTGATTCCTTTCAGCAAAAATCCTCTATTTTTCACTCTTGGAAATATCCCTCTGGGTGCTTGATCCAGGAACTGCCCAATGGGTACTCCATGGTTACTTGGGTGGAGCATGTTGAAGTGGATGATAAAATCCAAATACATCCACTGTACAAAGATATTATTGCTAAGGGCATTGCATATGGAGCTGAAAGGTGGATTATGGAACTTCAAAGAATTTCCGAGAGATTTGCTGCCTTTTATATTGAAAAGATACCTGATCATGACACTGCAGGAGTGATCAATTCTCTTGAAGGAAGGCGAAGTATAATGAATTTTGCTCATCGTATGCTCAAAATCTTCTGTGAAAGTATAACCATGGCAGATGGTTTGGACTTTCCACTTTCTGATCTGGCGAATACTAGTGGAGTGAGGGTCTCTATTCGCGAAAGCAAAATGATTGGACAACCAAGTGGCATGATTGTTGCAGCTGCTACCTCCATTTGGCTCCCTCTCCATTATATGAAAATTTTTGAGTTTTTCTCAGATGATAAAAACCGTGCTCAGTGGGATGTTCTTACCTGTGGAAACCAGTCACACAAGGTTGCACACATTTCAAATGGAATTCACCCTGGGAACTGTGTCTCGATTATTCGGCCATTCATCCCTAGCGAGAACAATGCACTGATTCTTCAAGAGAGTTTCACAACCCCCATGGGAACGTATGTCATATATGCTCCAACTGATGTAGCAACTATGACTTCGGCCATAATGGGAGAAGACTCTTCAATGTTACCAGTTCTTCCATCAGGTTTTGTCATCTCTCCAGAGGGTGACCCAAATGCAGCTTTGGGAGCATTTGATTGTTCAGATGGTGAAAGATTGGGAGGCTCATTACTGACTGTGGCATTTCAGATACTAGCTAGTGCTGATGGACGCAATATGCCAAATAGGAAAGCTGGAGCAGCTGTGAACTCCCTTTTAACCTCAACTATTCTCAGAGTCAAGGATGCTCTCAATTGCAACAACTTGGAGTGA 2127 0.4227 MASSMASAGGSGDDEGSQNLNNGRKNSYKRLTSSQTARLERFIKDCPHPDEAQRRQLAAEIGLEPRQIKFWFQNKRTQIKNQHERADNTALRVENDRIHTENVTMQEALKSMLCPSCGGPPCLEGDREHSIHNMKIENIHLKEEHEKVSRLLSRYLESQMLPPDQFQQGFFPIIGSSSNASHGNPMNQVIGASSSHDPNLALQMMDGGYNVYASEGIEKNLMAKVAATAMDELIRLLRINEPFWIKSSTQDGKLYLLLENYQKMFPKTKHFKGPNVRIEATKESGIVSINSLQLVDMFLDSNKWVNLFPTIVSKAETLKVLERGSAGNRSGALQLMSEQMHVLSPFVQPREFQFLRFCQQIEEGLVIADVSFDSFQQKSSIFHSWKYPSGCLIQELPNGYSMVTWVEHVEVDDKIQIHPLYKDIIAKGIAYGAERWIMELQRISERFAAFYIEKIPDHDTAGVINSLEGRRSIMNFAHRMLKIFCESITMADGLDFPLSDLANTSGVRVSIRESKMIGQPSGMIVAAATSIWLPLHYMKIFEFFSDDKNRAQWDVLTCGNQSHKVAHISNGIHPGNCVSIIRPFIPSENNALILQESFTTPMGTYVIYAPTDVATMTSAIMGEDSSMLPVLPSGFVISPEGDPNAALGAFDCSDGERLGGSLLTVAFQILASADGRNMPNRKAGAAVNSLLTSTILRVKDALNCNNLE* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1321 708 Gene3D - 12 96 - -
Pvu6g1321 708 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Pvu6g1321 708 Pfam START domain 225 445 IPR002913 GO:0008289
Pvu6g1321 708 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Pvu6g1321 708 ProSiteProfiles START domain profile. 215 449 IPR002913 GO:0008289
Pvu6g1321 708 CDD homeodomain 30 83 IPR001356 GO:0003677
Pvu6g1321 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 17 704 - -
Pvu6g1321 708 Pfam Homeodomain 26 80 IPR001356 GO:0003677
Pvu6g1321 708 MobiDBLite consensus disorder prediction 1 33 - -
Pvu6g1321 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 704 IPR042160 -
Pvu6g1321 708 SUPERFAMILY Bet v1-like 217 447 - -
Pvu6g1321 708 CDD START_ArGLABRA2_like 219 445 - -
Pvu6g1321 708 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Pvu6g1321 708 Gene3D - 222 431 IPR023393 -
Pvu6g1321 708 SMART HOX_1 24 86 IPR001356 GO:0003677
Pvu6g1321 708 SUPERFAMILY Bet v1-like 475 699 - -
Pvu6g1321 708 SMART START_1 224 446 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1321 Pvu-Chr6 24095770 24101197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1321 24 703 Homeobox Transcription Factor Family AT1G73360 43.447 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu6g1321 START 1.2e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1321 K09338 - gmx:100795075 1041.95