Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1309 ATGATTCTGCAACTACCATTTCTCGTCATCATCATGTTGATAACATTGCCTATATATCCTCTGGCATATTCTGCACATGAGCTTATTATAGCAAAACCTGGGTGTAGTTCCATATGTGGAGGTGTTGAGATCTATTACCCCTTTGGAATGAAAGATCCGAAATGCTACGTAGACAAGTGGTTTGAAATCGAATGCAGAGAAACTTCTGAGGGTCAAAAACCCTACCTAAAGTCTTTAAATCTGGAGGTGAGAGTCCTTGGCATGCATGAAGTTTATATAATGAATCCAATTTTCCATTGGAACTGCCCAAGCAGAAGAGCGAAGCCAGAGGTAATAAACCTGAGAGGAAGCCCTTTCGTGTATTCCCAGGATGCCAACAAATTTATGGCCATTGGTTGCAACAACCTTGCTTTTTTGCAGTCCAATGGGTCCAATGTTGCTTGTTGTGTTTCTATTTGTGATGACAGTGAAGAAGTCAACGATAACTTCAACTTGGTAAGAGAAGGTAGTTGCAGTGGCAGGTACTGCTGCGAGACTTCACTGCCCAAGTATCTTTTAGAATATAACGCAACACTTCAAGATTTTAACACCCAAAACAATAATACTGTGAGTGAACCGTGTAGTTATGCGCTCATTGTACATGGGCAAGTTACGTCTGATTTTAACAATATGGATCATGTTCCTGCAATTCTTGAGTGGAAGATTTTGGACAACACACTCCACAATTCTACCCTTCAACTCCTTTCAGAATCAGATTATGTCACTTGTAATCGCTCTAATTTTACATCTTCGCAAACCACAGGTTGGAGATGCGACTGCTTAGAAGGCTTCTATGGCAATCCCTACCTTGCAGGAGGCTGCACTGCCTTACCAGGTTACAATAACAGTCAAACCAAGAAGTGGGCTATAGTAGGAGTTTCGTCAAGTGTGGGATCTATCATTTTCCTCCTTGGTCTATGGTTGTTGTATAAGGATGTAAGGAAGAGAGTGATAGAGAAAGGGAAACAGAAGTTCTTCAAAAAGAATGGTGGTTTGTTGTTGCAACAAAGAATATCATCCAATGAAGCTAATCTAGACAAAGCTATTCTCTTTAGCTTAGATGATTTAGAGAAAGCCACTGACCACTTTAACATGAATAGAGTTGTTGGAAAAGGAGGGCAAGGTACTGTTTACAAAGGAATGCTGGTAGATGGTACAATTGTTGCAGTGAAAAAGTTTAAGGTGGAAGGAAATGTTGAAGAATTCATCAATGAGTTTGTCATTCTTTCACAAATTAACAATAGAAATGTGGTGAGGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCCCTACTTGTTTATGAATTCATACCTAATGGTAATCTCTTTGAATATTTGCATGACCAAAACAAGGAGTTATTACCAATGACCTGGGATATGTGTTTGAGAATTGCCACTGAGATTGCAGGAGCCATGTTTTACCTGCACTCAGTTGCATCTAAACCCATTTATCATAGAGATATCAAATCCACTAATATACTGTTAGATGAAAAATATAGGGCAAAAATTGCAGATTTTGGAACATCCCGAGTAATTTCTATTGAAGCTACTCATCTTACAACAGTTGTTCAAGGCACCTTTGGTTATTTGGATCCTGAGTATTTTCACACTAGTCAATTTACAGAGAAAAGTGATGTGTACAGTTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGCCAGAAGCCAATATCATCAGTAAGATCTGGAGAGTTCAAGAGTTTAGCTTCATATTTTGTTGAGTGTGTGGAGGAGGACAATCTGCTTGACATTGTTGACAAGAGAATTGTGAAAGAAGCAGAGAAAAGAGAAATCATTGCCGTTGCTAATCTTGCCAATAGATGCTTAGAGTTGAATGGAAAGAAACGTCCAACTATGAAAGAGATCACATTTGAATTAGAAGAGATTCATAGATTGGTTAGGAAGTGTAACGCAGAGAAAAACGAAGACGAATTTGAGCTTGCTCGAGTTGAAGATTATCATCCTTGGGATGGATATTCTACGTCAAAATCATGGGACTCGAAGCTGTTCAACTTGTGA 2076 0.3892 MILQLPFLVIIMLITLPIYPLAYSAHELIIAKPGCSSICGGVEIYYPFGMKDPKCYVDKWFEIECRETSEGQKPYLKSLNLEVRVLGMHEVYIMNPIFHWNCPSRRAKPEVINLRGSPFVYSQDANKFMAIGCNNLAFLQSNGSNVACCVSICDDSEEVNDNFNLVREGSCSGRYCCETSLPKYLLEYNATLQDFNTQNNNTVSEPCSYALIVHGQVTSDFNNMDHVPAILEWKILDNTLHNSTLQLLSESDYVTCNRSNFTSSQTTGWRCDCLEGFYGNPYLAGGCTALPGYNNSQTKKWAIVGVSSSVGSIIFLLGLWLLYKDVRKRVIEKGKQKFFKKNGGLLLQQRISSNEANLDKAILFSLDDLEKATDHFNMNRVVGKGGQGTVYKGMLVDGTIVAVKKFKVEGNVEEFINEFVILSQINNRNVVRLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNKELLPMTWDMCLRIATEIAGAMFYLHSVASKPIYHRDIKSTNILLDEKYRAKIADFGTSRVISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKPISSVRSGEFKSLASYFVECVEEDNLLDIVDKRIVKEAEKREIIAVANLANRCLELNGKKRPTMKEITFELEEIHRLVRKCNAEKNEDEFELARVEDYHPWDGYSTSKSWDSKLFNL* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1309 691 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 21 683 - -
Pvu6g1309 691 SMART serkin_6 376 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1309 691 Pfam Protein tyrosine and serine/threonine kinase 377 643 IPR001245 GO:0004672|GO:0006468
Pvu6g1309 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Pvu6g1309 691 Gene3D Transferase(Phosphotransferase) domain 1 450 672 - -
Pvu6g1309 691 Pfam Wall-associated receptor kinase galacturonan-binding 35 85 IPR025287 GO:0030247
Pvu6g1309 691 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 683 IPR045274 GO:0007166
Pvu6g1309 691 ProSiteProfiles Protein kinase domain profile. 376 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1309 691 CDD STKc_IRAK 382 648 - -
Pvu6g1309 691 SUPERFAMILY Protein kinase-like (PK-like) 358 645 IPR011009 -
Pvu6g1309 691 Gene3D Phosphorylase Kinase; domain 1 342 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1309 Pvu-Chr6 24007039 24009901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1309 35 663 Receptor kinase-like Gene Family AT1G69730 42.302 6.44e-178 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pvu6g1309 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1309 - - gmx:100798794 989.564