Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1286 ATGTGCAGCTGCATCTTTGGGCCAATAAGCATGGACAATTACCAAGGTGATTTAACTGACATAGTCCGAGCCAGTGGTGGAGCATATGGTGGTGGCAGCAGCAGCAGCTGCAGCACAGGCACTTCATCTGCTGAATTACCTACCACATCTCATCACCATACTATTATTACTCACAACCACAACCTCTCTCGTAATGATCACTGGCACCAACACTTCTCTTCCTCTTCTTCTTCTTCTTCTGACCCCATCACCTTCTCTTCTGTGCTTCAAGACCCCAGAGGACTCACCAACTTTGGTGACCCCTTCTCCACCATGAGAGATCCCTTCCTTCAGGAGCTTGGCATGCCCTCCGCTTCTGCCTACTTCACTGGGGGCTTGGAAGAAGCAGCTGCAAGTTTTGGTGCTGCTGCTGTTACTACTAATGCTAATACTAGTGCCACTGTTTTTGCTGCACACAAGATTCTTGAGGAGCATGACATGAGAAGACCTTGTAAAAACATATTCTCCAACATGATTCAGATCTCTCCCAATGCAAAGTTACCGGTCTCACCCTATGATTCCACCACACCCATGGCACCTTCTCCAAGGCCAATTAAACCTCCTGCTGTTGTTTCACCCAACATGGTTAATGCAAACTCCTCCAAGGATTGCCTTGTGGACACCACAGGAGTGCAGATCTCATCTCCACGGAATCCGGGCCTTAAACGAAGGAAGAACCAGGCCAAAAAGGTAGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACCGGAGAGGTTGTTCCGTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTACTACAGATGCAGCAGCTCAAAGGGTTGCTCTGCGAGGAAGCAAGTTGAGCGGAGCAGAACAGACCCAAACATGTTGGTTATTACATACACATCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTGGCTGGTTCTACAAGGTCACAGCCATCCAAGAACAATGCTGGAAATTCAAAGAGCTCAGAAGGCTCAAACCCCCAAAAGAGCACAACAGCAAAAGCAAAGGATGATCAGCAGCAGGAGAGCAACACCAGTGAGGGCAATGTGTCCCCAGTTGTTGCTGGGAACTCATCAGCAAACAGTGCATCTGTGAAGGAGGAGAATATGGAAGACATAGAGAAGCAGTTTGAGATGGATGAGGGAGAGTTCAGTGATGGACTCCCTTACAAGCCTTGCTTGATGGATCAGAGTAATAATCAATCTGAGGATTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCACTGGATCTTTTGTTTACCCAAGGTTTTGGTGCAGCTGGTGATCAAAGGGAGGAATCCAAGGCCTTAGATCCATTCCATCTGTTTGACTGGTCAGGAGACAACAACACCAACACAAACACCAGTTCATTTGAAGAACCTAATACAAAGAGAAGGTCATAA 1488 0.4724 MCSCIFGPISMDNYQGDLTDIVRASGGAYGGGSSSSCSTGTSSAELPTTSHHHTIITHNHNLSRNDHWHQHFSSSSSSSSDPITFSSVLQDPRGLTNFGDPFSTMRDPFLQELGMPSASAYFTGGLEEAAASFGAAAVTTNANTSATVFAAHKILEEHDMRRPCKNIFSNMIQISPNAKLPVSPYDSTTPMAPSPRPIKPPAVVSPNMVNANSSKDCLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNAGNSKSSEGSNPQKSTTAKAKDDQQQESNTSEGNVSPVVAGNSSANSASVKEENMEDIEKQFEMDEGEFSDGLPYKPCLMDQSNNQSEDFFAELGEIEADPLDLLFTQGFGAAGDQREESKALDPFHLFDWSGDNNTNTNTSSFEEPNTKRRS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1286 495 MobiDBLite consensus disorder prediction 307 393 - -
Pvu6g1286 495 Pfam WRKY DNA -binding domain 265 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu6g1286 495 Gene3D WRKY domain 237 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu6g1286 495 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu6g1286 495 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 15 476 - -
Pvu6g1286 495 MobiDBLite consensus disorder prediction 471 495 - -
Pvu6g1286 495 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu6g1286 495 SUPERFAMILY WRKY DNA-binding domain 261 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu6g1286 495 MobiDBLite consensus disorder prediction 473 488 - -
Pvu6g1286 495 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 476 IPR044810 GO:0003700
Pvu6g1286 495 MobiDBLite consensus disorder prediction 280 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1286 Pvu-Chr6 23845672 23849501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1286 1 480 WRKY Transcription Factor Family AT1G30650 42.331 1.09e-97 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu6g1286 WRKY 2.9e-25 CL0274