Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1277 ATGGGTATGGAAGCTGATGCTACCACCACTTCACAGTTACCACTCACCGACACAGACATCAACTGGGACAGGTTGGACAAAACCAAGTTCCACGTCATCGGTGCCATTTTGTTCACCGCTCAATCAGGCCTGCTTCATCCAACGGCGGTGGTCAAGACACGAATGCAAGTGGCGGGGTCGGAGTTGTCGCACGTGCGAGGAACGTCGGTGCTGGCCCACATTCTGCGGAGCGACGGCGTTCCGGGAATCTTCAGAGGCTTCGGCACTTCCGCCATTGGTTCAATCCCCGGTAGGGTTGTGGCCCTCACATCTCTCGAGGTCTCCAAAGACATCATCTTGAAACACACGCAAGGCACTCGCATTCCAGAAGCTTCTCGTGTTGGCCTCGCTAACGCACTCGCCGGCATGATCTCTAACTTGGTTTCCTGCGTCTACTTCGTGCCCTTGGATGTGATTTGTCAGAGGTTGATGGTGCAGGGTCTTCCTGGGACAACATTTTGTAGAGGGCCTTTTGATGTTGTTCGGAAAGTTGTGGAGGCCGAAGGGTTTCGTGGTTTGTATAGGGGTTTTGGATTAACAGCGATTACGCAGTCCCCTGCTTCTGCACTTTGGTGGGGTTCATATGCTGCCGCACAACACCTAATTTGGAGAAGTCTGGGCTACAAAGATGATACGGGTGAAAAACCTTCAGATGTGGAAATGGTTACAGTTCAGGCTAGTGCAGGGATGGTGGCTGGTGCTTGTTCATCTGTTATCACTACTCCCATAGATACTGTGAAAACACGTCTTCAGGTGATGGACAACTATGGTTCTGAAAGACCATCAGTACTGAAGACAGCAAAGATTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACAGGGGTTTTGGACCAAGATTTTTAAACATGTCACTTTATGGAACAACCATGATTGTTACTTATGAACTGATAAAGAGATTATCGGTTCAATCAAGTTTGAGGTCTTTTACGTAG 993 0.4914 MGMEADATTTSQLPLTDTDINWDRLDKTKFHVIGAILFTAQSGLLHPTAVVKTRMQVAGSELSHVRGTSVLAHILRSDGVPGIFRGFGTSAIGSIPGRVVALTSLEVSKDIILKHTQGTRIPEASRVGLANALAGMISNLVSCVYFVPLDVICQRLMVQGLPGTTFCRGPFDVVRKVVEAEGFRGLYRGFGLTAITQSPASALWWGSYAAAQHLIWRSLGYKDDTGEKPSDVEMVTVQASAGMVAGACSSVITTPIDTVKTRLQVMDNYGSERPSVLKTAKILLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQSSLRSFT* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1277 330 Gene3D Mitochondrial carrier domain 126 327 IPR023395 -
Pvu6g1277 330 Gene3D Mitochondrial carrier domain 20 125 IPR023395 -
Pvu6g1277 330 PANTHER OS01G0329400 PROTEIN 1 323 - -
Pvu6g1277 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 320 IPR018108 -
Pvu6g1277 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 111 IPR018108 -
Pvu6g1277 330 SUPERFAMILY Mitochondrial carrier 23 316 IPR023395 -
Pvu6g1277 330 Pfam Mitochondrial carrier protein 33 115 IPR018108 -
Pvu6g1277 330 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Pvu6g1277 330 Pfam Mitochondrial carrier protein 237 322 IPR018108 -
Pvu6g1277 330 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 323 - -
Pvu6g1277 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1277 Pvu-Chr6 23765813 23768365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1277 17 320 Chloroplast and Mitochondria Gene Families AT5G15640 50.000 2.49e-104 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1277 K15121 - gmx:112997745 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1277 6 23765813 23768365 Pvu6g1277 6 23765813 23768365 ECH