Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1274 ATGGCTGGTAAAAGTTCAATTACTCAGCCAGCAACCAGACATGGCACCAACAAACTGACCAAAAATGACTTAGCTGATCTAGAATGGACCAATAGGATTCCAGAGTGTCCAACTTACTACCCATCAGAGCATGAGTTTGACCATCCTTCAGTTTATCTGCAGAAAATAGCTCCTGAGGCTTCTAAATATGGTATGTGCAAAATTGTTTCTCCAATTGCAGCCTCAAATCCACCTGCTTTTGTCTTAATGAAAGAGAAAAGGGATTTCAAGTTTGAAACAAACTTACAGCCTCTCCGTCTTTCTAAATGGAATGAGAAGGATGCAATAACCTTTTCAATGAGTGGCAGAAAATATACGTATGAGGAATTTGAGGCTCTTGCAAACAAGACTTTTTTCAGTAGATTTCATTGTTCTGGAGGTCTTCCTTCTTCATGTGTGGAAAAGGAGTTCTGGCACGAGATGATGCATGGAAAGAAGGGAAAAGTTGAGTATGGAATCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGGACAAGTAAATGGAATTTGAAGAATTTCTCACGGCTACTGCAATCGCCGCTACGTTTAGTTGACATGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATAATCATTCAGGTGCAAGTAAAACTTGGTACGGCGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGATTGTCTTACAACATGTGTATTGCAATAAGATCTTAACAAAACATGGAGAGGATGGAGCTTTCAGATTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTCATGCTACAACATGATGTGGAAGTTTACAAGGCTGTACAGAATCCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTAATGATGAGTGGTTTCCTCTTGGAGCTGCAGCTAGCAGGCGTTATGCACTTCTCAGAATGATGCCTTTAATTCCATATGAGGAAATTCTTTGTAAAGAAGCAATGTTTGTTTACAAGTCCTCAAGGGTCAGAAGTTCCAAGAACAAGCCTGAAGACAAAGCATCTTATAATGCTATAGTGCAGCCTTTCTTGCATCTTATGCAATTTTATATGACATACCTTTTGCAACAGAAGAGTTCAAGAAACTTGCAAAGGTCTTCCAATACATCAGGTTTGGTGATATGCCGCATATGCCACAGGGATTGTTATGTAGCTTACCTGCTGTGCAAATACTGCTTTTCTCATCCGATTTGTCTTTTCCATGACATTGCACCACATACTTGTATATGTGGAAGATTTTATTCTATTTTCAAAAGGAATGACATTTTCGAACTCGAAGAAGCCGCCAAAAGTTTTCAACAGGAAAAAAAGTGCAACGAGACATTCTCTCTATCAAGTATTTTCTCCTGTTACAGAAATGAATGCATCAAACATCTTGAGGATCATCCTTGGCACGAAGAAAACAGTGTAAGGGGAACTGCTAATTCTCCAGGGGCAGCATCTAAACCGAAAACAAAAATAGCTGACTGCATTAAGCACAGTGTTGAAAATAAGACAAGAATGCTGCATTGGAGAAACTATGGGCTTCCATCTGTGAAGGGTACCAATAGGCCAGAAATCGTTTATAACCTGAGAAAACGGAAATCAAATTGA 1764 0.3934 MAGKSSITQPATRHGTNKLTKNDLADLEWTNRIPECPTYYPSEHEFDHPSVYLQKIAPEASKYGMCKIVSPIAASNPPAFVLMKEKRDFKFETNLQPLRLSKWNEKDAITFSMSGRKYTYEEFEALANKTFFSRFHCSGGLPSSCVEKEFWHEMMHGKKGKVEYGINVEGSAFSCDPDDRLGTSKWNLKNFSRLLQSPLRLVDMEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYNHSGASKTWYGVPGYAASQFEKIVLQHVYCNKILTKHGEDGAFRFLAQKTTMFPPNVMLQHDVEVYKAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFANDEWFPLGAAASRRYALLRMMPLIPYEEILCKEAMFVYKSSRVRSSKNKPEDKASYNAIVQPFLHLMQFYMTYLLQQKSSRNLQRSSNTSGLVICRICHRDCYVAYLLCKYCFSHPICLFHDIAPHTCICGRFYSIFKRNDIFELEEAAKSFQQEKKCNETFSLSSIFSCYRNECIKHLEDHPWHEENSVRGTANSPGAASKPKTKIADCIKHSVENKTRMLHWRNYGLPSVKGTNRPEIVYNLRKRKSN* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1274 587 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Pvu6g1274 587 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 586 - -
Pvu6g1274 587 SMART cupin_9 180 353 IPR003347 -
Pvu6g1274 587 SUPERFAMILY Clavaminate synthase-like 188 369 - -
Pvu6g1274 587 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Pvu6g1274 587 ProSiteProfiles JmjC domain profile. 180 353 IPR003347 -
Pvu6g1274 587 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 2 586 - -
Pvu6g1274 587 Gene3D Cupin 36 399 - -
Pvu6g1274 587 SMART JmjN_1 35 76 IPR003349 -
Pvu6g1274 587 Pfam jmjN domain 37 69 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1274 Pvu-Chr6 23754862 23758330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1274 5 492 JUMONJI Transcription Factor Family AT2G34880 29.496 1.18e-57 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu6g1274 JmjC 1.4e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1274 - - vra:106753585 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1274 6 23754862 23758330 Pvu6g1274 6 23754862 23758330 ECH