Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1273 ATGGCAACAGCGGAGGCAGCTCCTGCAGGGCTTGGCCCTAGATATGCACCCGATGACCCTACTCTTCCACAACCGTGGAAGGGATTGATTGATGGCAGTACTGGTCTTTTATACTATTGGAATCCTGAAACCAATGTCACGCAATATGAAAAACCTGCCCCCTTAACGCCACCCTTGCCTGCGCCTGTGGCTTCTGCACCGAGCTTGGCACCTATACCTGTGGCTCACACAATGCAGGCTGGTGGGATGGGGCCGCAACATGGACAACAGTTAATGCAAGGGCAACCCTCGCAACAGCAGGTGGGTCACCTTGCCCAACAGCATGGGCAATCGATGCCGCAACAGCAGCAGCAGAGTCCCCATATGGTGCAGGCCACTCAGCAGAAACCCTCTCAGGGTCCCCAGTCTTCCCAGCAGCAGAACTCACTGATGACACAGTCAGGGCCGCAACCCGGGTTGCATCAAGCCAGACAGCAAATGATGCAGCCCCATGGGCAGCAAATGATGCAGCAGCCTCAAGGACAGCAAATTCAACATCAGATGCCGCCACAGGCAATCCATTCCCAGCATTTTGGGCAAGGAATGCCTCAGGATCATGGTTCACATATTGTACCTCCACAAGTACATCAGTTCCCTAACCAAAACATGCATTATATGTCATATCAGCAAAACATTATTACACCCAGGCAATCAAACTCTCAGCACATTCAGCCAAACACGGTCTCACCTGGGCAACCTAACCCCCAGCAGGTTCAGCATAGCATGCATGGTCAGCCCTTCGAAAATCAACAAACAGCATTTCCAAAGGTAGAGGAAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACTTTCACCTTCCCAGTATCCACAAAGGAGTACCTTGCCTGTTCAGAATAATCAGAACCTTCCTGCTGACACAGCTTCTGGTCAAATGCCTAATGTAGGTGTCAATGCTGGCCAGCCCCAGCAATTCAGGACTGCCTTATCAGGCAGTGTGCATCAGTCGCCCTCTGCAATGCCATTGCAGCAGGGTGGATCTGATTTATATTACCAACATGGTCCTAACTTTCATAAGCAGATGAGCCCAGGAATGATGCATGGTCACCCATCCAATGTCCATCCTGCTGGCCAAAAAATGAGTCACGAGGATAATTTGCGCAGTAGAGCAGGAAACGAATATTACTATAATTCTAACAAAGATATGCCAACAATGGGTCGTCGGCAACCAGATATGACTCAAATACCCGTTCCAAGAAATCCGCAGGATATGAGGGTTGGCAATGCTCCTTTTCAAAATGTAATGCCAAGTGGAAATGGAAGTGCTATTGCTGGGAATGCTATACCTAGCATGTTTGTTCCTCCAATGGGAGGACCTTCACCCCTTTCCTCTAACACTTTAATGAGGCCTTCTTATATGGGATCTTCTGAGGCTAGTGATCTTTCACCTGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGGTGACATTCCCCCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGTTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTAGCAATTGCCAAAACCGGCTCGGGGAAAACATTGGGTTACCTAATCCCTGCCTTCATTCTTCTTAGACAGCGACACAATAATTCTCTGAATGGCCCCACTGTATTGGTTTTGGCTCCAACTCGTGAACTTGCGACACAGATCCATAATGAGGTTATCAAGTTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTGAAGGAATTAGACCGGGGAGCAGACATTGTTGTTGCCACACCCGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTACTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGGATGAGATTCCTGCACGGAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTGGTGAACTTCTTGTTAACCCTGTCCAGGTTAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCACAAATGGAGAAGCAGAGGCGTTTGGAGCAGATTCTCAGATCCCAAGAACGTGGTTCTAAGGTCATAATATTTTGCTCCACAAAGAGGTTATGTGATCAACTAGCTCGTAATATTGGTCGCACTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAATTCCGGACTGGCAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTTATCAATTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGAATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACACGCAGGTGACTTAATCAAAGTTTTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCTTCAAACTTTGGAAAGGAACGGGGTGGGATGAGTCGGTTTGATTCTGGTGGTGGGCGTTGGGAGACTGGTGGTCGTGGTAGCATGAGAGATGGTGGCTTTGGTGGCCGTGGTGGCATTAGGGATGGTGGCTTTGGAGGTCGTGGGGGTGGCATGAGGGATGGTGGTTTTGGGGGCCGTGGGGGTGGCATGAGAGATGGTGGCTTTGGTGGTCGAGGTGGTGGCATGAGGGATGGGGGATTTGGTGGACGTGGTGGCGGCGGCTTTGGTGGACGTGGTGGCATGAGGGATGGAGCTGGTGGAAGAGGTGATTACTTTCCTGGTAGGGGCAACAGGGGTAGGGGATCTGGTGGTCCTCGCGGTGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGTGGACTGGGACGTGGCCGATTTGACAACAGAAGGGATGTTTCTTACAAAAATAGAGGCAGAAGTTATAGTCGTAGCCCAGAAAGAGTCCGAACATGGGATTATAGTAGAAGTAGCAGCAGAAGCCGTAGTAGAAGCAGGAGCAGGAGTTGGAGCAGGGGTCGTAGTCGCAGTCGCAGCTGGTCCCGTGGACGAAGTTACAGTCGCAGCCGGAGCAGGAGCCGGAGCCACAGCCGCAGCCCCAGTTATGATAGGCGGGATAGGTCAGTTCAACCCCTTCCTGATCAAAAGGATCTTAGGGCCCACGAGGTAGGAACTTCTGATCCAAGAATGCTTCCCTTGTCTCCTGGTCCTGGCACACAAGCGAATTCCTCTTTGGGAAATGAACAAGTCGAGCAGCAACCTGTTGTTGGTAGCTCTGATCCAGGTAATCCAGAAGCTGTAGCAGCAGACCTTAGTCATCAATCAAGTTCTGGTGTTTAG 3543 0.4934 MATAEAAPAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPLTPPLPAPVASAPSLAPIPVAHTMQAGGMGPQHGQQLMQGQPSQQQVGHLAQQHGQSMPQQQQQSPHMVQATQQKPSQGPQSSQQQNSLMTQSGPQPGLHQARQQMMQPHGQQMMQQPQGQQIQHQMPPQAIHSQHFGQGMPQDHGSHIVPPQVHQFPNQNMHYMSYQQNIITPRQSNSQHIQPNTVSPGQPNPQQVQHSMHGQPFENQQTAFPKVEEAEFKNGSQVGLSPSQYPQRSTLPVQNNQNLPADTASGQMPNVGVNAGQPQQFRTALSGSVHQSPSAMPLQQGGSDLYYQHGPNFHKQMSPGMMHGHPSNVHPAGQKMSHEDNLRSRAGNEYYYNSNKDMPTMGRRQPDMTQIPVPRNPQDMRVGNAPFQNVMPSGNGSAIAGNAIPSMFVPPMGGPSPLSSNTLMRPSYMGSSEASDLSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIAGELLVNPVQVNIGSADELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRFDSGGGRWETGGRGSMRDGGFGGRGGIRDGGFGGRGGGMRDGGFGGRGGGMRDGGFGGRGGGMRDGGFGGRGGGGFGGRGGMRDGAGGRGDYFPGRGNRGRGSGGPRGGHVGWGRGERGMDDRGLGRGRFDNRRDVSYKNRGRSYSRSPERVRTWDYSRSSSRSRSRSRSRSWSRGRSRSRSWSRGRSYSRSRSRSRSHSRSPSYDRRDRSVQPLPDQKDLRAHEVGTSDPRMLPLSPGPGTQANSSLGNEQVEQQPVVGSSDPGNPEAVAADLSHQSSSGV* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 1097 1125 - -
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 1137 1160 - -
Pvu6g1273 1180 Pfam WW domain 22 52 IPR001202 GO:0005515
Pvu6g1273 1180 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 292 975 - -
Pvu6g1273 1180 CDD DEADc 515 709 - -
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 1062 1096 - -
Pvu6g1273 1180 CDD SF2_C_DEAD 723 852 - -
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 230 256 - -
Pvu6g1273 1180 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 655 663 IPR000629 -
Pvu6g1273 1180 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Pvu6g1273 1180 Pfam Helicase conserved C-terminal domain 735 843 IPR001650 -
Pvu6g1273 1180 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 83 174 - -
Pvu6g1273 1180 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Pvu6g1273 1180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 882 IPR001650 -
Pvu6g1273 1180 Gene3D - 714 884 IPR027417 -
Pvu6g1273 1180 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 504 532 IPR014014 GO:0003724
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 885 1180 - -
Pvu6g1273 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 858 IPR027417 -
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 76 174 - -
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 1012 1061 - -
Pvu6g1273 1180 SMART helicmild6 759 843 IPR001650 -
Pvu6g1273 1180 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 535 709 IPR014001 -
Pvu6g1273 1180 MobiDBLite consensus disorder prediction 1 24 - -
Pvu6g1273 1180 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 292 975 - -
Pvu6g1273 1180 Gene3D - 480 713 IPR027417 -
Pvu6g1273 1180 SMART ww_5 21 54 IPR001202 GO:0005515
Pvu6g1273 1180 SMART ultradead3 523 726 IPR014001 -
Pvu6g1273 1180 Pfam DEAD/DEAH box helicase 528 698 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1273 Pvu-Chr6 23742656 23750501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1273 502 881 Eukaryotic Initiation Factors Gene Family AT3G19760 32.898 5.71e-63 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1273 6 23742656 23750501 Pvu6g1273 6 23742656 23750501 ECH