Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1268 ATGGTCGTGAGCCAGAACACGGTCACAGAAACGGAAATTATCTGCCAGAAGAGCATTCCGATGCTGGACGTGAAGTACCACCTTTGCGTGGCGCAAGAACACGGCGTTAAGGTCGAGGTTTCGCCCACCTCCAACGTTGTTCCCATATTCGGTCACGTGAGGGTTGCTGCTGAATCTGTTTCTACCGAAACGACTCGGTTTGAATCGCCCGTGAGTTGCCCTGAGATGATTGGAGATTCAAATTTAGAGGCTCCTGCTAATAAGTTTACACCAGATGTGCGATCTGGCTGTTGTGCTGATATTGGACCCAGGGGATCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTGCCCATCTTGGATTTGACTTTGAGCATCCTATGGCTAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCAGATGCAGCTGCCTTTGTTAAAAACAATGCTATGAGATTATTTTTTGAAGATGCTCATATGCTGCAATCGTATGATGCTGATGCACTTTTTCTGAAGAGGTTGGAAGATTCTCATCGAAAGGCGTTTTTGGGAGCAGACATCGCCTTGTCTGATGAACAAAGTGTTAGTAGTTCCTGTGGAACAACGGCGTTGACTGCTCTTGTTCTTGGAAGGCATTTGATGGTTGCTAATGCTGGGGACTGTAGAGCTGTTCTTTGTAAGCGTGGAGTAGCTGTTGATATGTCCAAAGATCACAGACCAAGTTATTTACCAGAACGCAGGAGAGTGGAGGAGATGGGTGGTTATATTGATGATGGGTATCTCAATGGTTATCTTTCTGTGACTCGTGCCCTTGGGGATTGGGACTTTAAATTTCCACTTGGTTCTGTGTCGCCTCTCATTGCCGACCCGGATGTTCAGGTAGTCACATTGGCAGAGGAGGATGAGTTCTTGATCATTGGTTGTGATGGTGTTTGGGATGTGATGTCAAGCCAGGATGCTGTTAGTCTGGTGCGGCGTGGATTAAGAAGGCATGACAACCCTGAACAATGTGCCAGAGAGCTAGTTAAGGAAGCTTTGCGCCTACACTCATCAGATAATCTTACTGTGATTGTTATCTGCTTGTCCCCTGTCCAGATTGTCGAGTCATGTCCACCCCACATGCGAAGATTCAGATCCTGCTCTCTGTCTGAAGAGGCCCGGAACAGGTTGAGGAGCTTGCTAGAGGGAACCTGA 1203 0.473 MVVSQNTVTETEIICQKSIPMLDVKYHLCVAQEHGVKVEVSPTSNVVPIFGHVRVAAESVSTETTRFESPVSCPEMIGDSNLEAPANKFTPDVRSGCCADIGPRGSMDDEHIQIDDLAAHLGFDFEHPMASAFYAVFDGHGGPDAAAFVKNNAMRLFFEDAHMLQSYDADALFLKRLEDSHRKAFLGADIALSDEQSVSSSCGTTALTALVLGRHLMVANAGDCRAVLCKRGVAVDMSKDHRPSYLPERRRVEEMGGYIDDGYLNGYLSVTRALGDWDFKFPLGSVSPLIADPDVQVVTLAEEDEFLIIGCDGVWDVMSSQDAVSLVRRGLRRHDNPEQCARELVKEALRLHSSDNLTVIVICLSPVQIVESCPPHMRRFRSCSLSEEARNRLRSLLEGT* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1268 400 ProSiteProfiles PPM-type phosphatase domain profile. 94 364 IPR001932 -
Pvu6g1268 400 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
Pvu6g1268 400 Gene3D - 80 368 IPR036457 -
Pvu6g1268 400 SUPERFAMILY PP2C-like 89 366 IPR036457 -
Pvu6g1268 400 SMART PP2C_4 84 362 IPR001932 -
Pvu6g1268 400 PANTHER PROTEIN PHOSPHATASE 2C 8 387 IPR015655 GO:0004722|GO:0006470
Pvu6g1268 400 SMART PP2C_SIG_2 109 364 IPR001932 -
Pvu6g1268 400 Pfam Protein phosphatase 2C 104 356 IPR001932 -
Pvu6g1268 400 CDD PP2Cc 93 364 IPR001932 -
Pvu6g1268 400 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 8 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1268 Pvu-Chr6 23690825 23693341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1268 1 399 PP2C-type Phosphatase Gene Family AT1G48040 56.543 7.91e-143 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1268 K14803 - gmx:100798957 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1268 6 23690825 23693341 Pvu6g1268 6 23690825 23693341 ECH
Pvu3g1232 3 29616330 29618826 Pvu6g1268 6 23690825 23693341 PCT